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rifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00029
Bact-Virrifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00029
Identity
- Kingdom:
- phage
Quality
82.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 20-78
Domain cluster:
representative
CATH (41)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2raeA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.79 | 55.0 | 4.14e-01 | 72.9% | 52.6% |
| 1ignB02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.79 | 62.0 | 5.29e-01 | 100.0% | 54.3% |
| 4m70B00 | 1.10.246.200 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain | 0.75 | 51.0 | 4.39e-01 | 71.2% | 50.5% |
| 3tjmA02 | 1.10.1470.20 | Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2 | 0.72 | 63.0 | 5.40e-01 | 96.6% | 62.2% |
| 3x1oA00 | 1.20.120.1790 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.72 | 61.0 | 4.57e-01 | 100.0% | 38.3% |
| 2w43A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.71 | 58.0 | 5.93e-01 | 91.5% | 98.2% |
| 2ymmA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.70 | 59.0 | 5.55e-01 | 96.6% | 80.8% |
| 2no4A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.69 | 57.0 | 5.40e-01 | 96.6% | 80.0% |
| 1nv8B01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.68 | 45.0 | 4.33e-01 | 84.7% | 57.7% |
| 1j09A05 | 1.10.10.350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.65 | 56.0 | 4.83e-01 | 100.0% | 73.5% |
| 3e3vA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 49.0 | 5.05e-01 | 100.0% | 92.5% |
| 4ye6A02 | 1.10.10.2420 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.65 | 54.0 | 5.45e-01 | 100.0% | 98.3% |
| 7ccmB01 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.64 | 58.0 | 4.32e-01 | 100.0% | 44.1% |
| 3pasA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.64 | 47.0 | 3.35e-01 | 96.6% | 25.3% |
| 1sqgA01 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.63 | 55.0 | 4.22e-01 | 100.0% | 43.3% |
| 3lcnB00 | 1.10.340.40 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain | 0.63 | 55.0 | 4.70e-01 | 100.0% | 64.9% |
| 3c2bA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.63 | 49.0 | 5.15e-01 | 100.0% | 100.0% |
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.62 | 52.0 | 4.80e-01 | 100.0% | 88.9% |
| 3fbzA01 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 53.0 | 4.48e-01 | 100.0% | 72.5% |
| 3ehmA03 | 1.20.120.840 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SusD-like, tetratrico peptide repeats domain | 0.61 | 49.0 | 3.91e-01 | 88.1% | 98.3% |
| 3cxbA03 | 1.10.1740.30 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain | 0.61 | 47.0 | 4.29e-01 | 93.2% | 63.0% |
| 2fu2A00 | 1.20.1440.50 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like | 0.60 | 40.0 | 3.75e-01 | 71.2% | 100.0% |
| 2pkeA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.59 | 49.0 | 4.62e-01 | 100.0% | 83.3% |
| 4rocA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.59 | 46.0 | 3.93e-01 | 88.1% | 67.0% |
| 3vkgA09 | 1.20.920.30 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.59 | 49.0 | 3.85e-01 | 100.0% | 55.6% |
| 2bpoA04 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.59 | 46.0 | 3.42e-01 | 88.1% | 89.5% |
| 1a59A02 | 1.10.230.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 | 0.59 | 48.0 | 4.05e-01 | 96.6% | 97.2% |
| 3urzA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.57 | 39.0 | 2.70e-01 | 83.1% | 20.8% |
| 1f20A01 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.57 | 43.0 | 3.26e-01 | 86.4% | 89.6% |
| 6w6jD01 | 1.10.1780.10 | Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain | 0.57 | 44.0 | 3.54e-01 | 89.8% | 80.2% |
| 4agsB04 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.57 | 46.0 | 3.59e-01 | 91.5% | 49.6% |
| 4irfB00 | 1.10.1780.10 | Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain | 0.56 | 47.0 | 3.62e-01 | 96.6% | 77.1% |
| 7qocA01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.55 | 41.0 | 3.04e-01 | 86.4% | 35.8% |
| 3lkdB01 | 1.20.1260.30 | Mainly Alpha › Up-down Bundle › Ferritin › N6 adenine-specific DNA methyltransferase, N-terminal domain | 0.55 | 45.0 | 3.32e-01 | 98.3% | 74.1% |
| 3ejnA03 | 1.20.120.840 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SusD-like, tetratrico peptide repeats domain | 0.55 | 42.0 | 3.58e-01 | 88.1% | 89.2% |
| 6vw7B03 | 1.20.1440.230 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain | 0.55 | 41.0 | 3.72e-01 | 83.1% | 100.0% |
| 1mw9X02 | 1.10.460.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 | 0.53 | 43.0 | 3.34e-01 | 100.0% | 55.2% |
| 4g1tA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.53 | 39.0 | 3.91e-01 | 84.7% | 77.0% |
| 2zxqA06 | 1.20.1270.70 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle | 0.53 | 35.0 | 3.44e-01 | 100.0% | 62.1% |
| 1hi8A02 | 1.10.490.60 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phage p2 RNA dependent RNA polymerase domain | 0.52 | 40.0 | 3.11e-01 | 86.4% | 86.1% |
| 1x5bA01 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.50 | 37.0 | 3.01e-01 | 100.0% | 37.8% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4973028 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.78 | 68.0 | 6.18e-01 | 100.0% | 73.8% |
| 3987997 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.74 | 66.0 | 6.09e-01 | 100.0% | 84.0% |
| 3447076 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.74 | 66.0 | 5.73e-01 | 100.0% | 67.8% |
| 3589265 | 101.1.2.145 ↗ | alpha arrays › HTH › HTH › winged helix domain › HHH_4 | 0.74 | 65.0 | 5.67e-01 | 100.0% | 71.1% |
| 3268640 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.73 | 61.0 | 6.07e-01 | 100.0% | 90.0% |
| 3646654 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.73 | 65.0 | 5.15e-01 | 100.0% | 50.8% |
| 3389549 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.72 | 65.0 | 5.61e-01 | 100.0% | 76.7% |
| 3652636 | 101.1.1.295 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_70 | 0.71 | 61.0 | 5.60e-01 | 100.0% | 76.2% |
| 1693526 | 2008.1.1.70 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_BsaWI | 0.70 | 61.0 | 3.97e-01 | 100.0% | 25.0% |
| 3450546 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.70 | 61.0 | 4.92e-01 | 100.0% | 51.7% |
| 5058390 | 610.3.1.1 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey | 0.70 | 59.0 | 4.23e-01 | 100.0% | 32.2% |
| 4456736 | 610.3.1.1 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey | 0.68 | 59.0 | 4.25e-01 | 100.0% | 33.7% |
| 5083713 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.68 | 40.0 | 3.21e-01 | 81.4% | 28.3% |
| 4355585 | 101.1.1.304 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › GatB_Yqey | 0.68 | 57.0 | 5.70e-01 | 96.6% | 96.7% |
| 3401673 | 101.1.1.65 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 | 0.68 | 59.0 | 5.04e-01 | 100.0% | 61.1% |
| 4064960 | 610.3.1.1 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey | 0.67 | 57.0 | 4.04e-01 | 100.0% | 31.1% |
| 3455132 | 101.1.1.121 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 | 0.67 | 58.0 | 4.67e-01 | 100.0% | 50.0% |
| 3482846 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.67 | 54.0 | 5.37e-01 | 100.0% | 90.0% |
| 3657981 | 198.1.1.16 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › HTH_70 | 0.66 | 56.0 | 5.15e-01 | 100.0% | 78.8% |
| 4048642 | 101.1.1.304 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › GatB_Yqey | 0.66 | 55.0 | 5.41e-01 | 96.6% | 90.5% |
| 3528955 | 103.4.1.6 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › EloA-BP1 | 0.64 | 44.0 | 4.45e-01 | 72.9% | 75.0% |
| 5054506 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.62 | 53.0 | 3.77e-01 | 100.0% | 30.8% |
| 3316630 | 148.1.2.1 ↗ | alpha arrays › Histone-like › Histone-related › double Clp-N › Clp_N | 0.62 | 53.0 | 3.81e-01 | 96.6% | 72.6% |
| 3991367 | 101.1.2.558 ↗ | alpha arrays › HTH › HTH › winged helix domain › CCD_aECM | 0.62 | 49.0 | 5.03e-01 | 100.0% | 100.0% |
| 3927802 | 198.1.1.1 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 | 0.61 | 50.0 | 4.67e-01 | 100.0% | 96.2% |
| 3328228 | 601.33.1.7 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › Exo70_N | 0.57 | 37.0 | 3.30e-01 | 98.3% | 45.9% |
| 3856031 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.55 | 45.0 | 3.57e-01 | 91.5% | 79.2% |
| 3502052 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.55 | 44.0 | 2.82e-01 | 100.0% | 62.7% |
| 3244442 | 148.1.3.342 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Stanniocalcin | 0.54 | 46.0 | 3.68e-01 | 98.3% | 49.6% |
| 3884349 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.53 | 44.0 | 3.49e-01 | 93.2% | 78.4% |
| 4153338 | 101.1.2.567 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF222 | 0.52 | 43.0 | 3.34e-01 | 100.0% | 43.2% |
| 3384318 | 601.33.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain | 0.52 | 43.0 | 4.05e-01 | 93.2% | 84.0% |
| 4888664 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 38.0 | 3.95e-01 | 88.1% | 88.9% |
| 3424523 | 604.5.1.7 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › ALMT | 0.52 | 41.0 | 3.57e-01 | 89.8% | 73.7% |
| 5005181 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 43.0 | 3.16e-01 | 100.0% | 44.6% |