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rifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00032
Bact-Virrifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00032
Identity
- Kingdom:
- phage
Quality
88.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 207-321
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24703.3 best | DUF7666 | 27.5 | 5.20e-06 | 86.1% | 66.3% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2auaA01 | 3.20.170.10 | Alpha Beta › Alpha-Beta Barrel › ADP-ribosylation fold › ADP-ribosylation domain | 0.68 | 54.0 | 5.58e-01 | 87.8% | 88.9% |
| 2hw2A00 | 3.20.170.40 | Alpha Beta › Alpha-Beta Barrel › ADP-ribosylation fold › Rifampin ADP-ribosyltransferase domain | 0.61 | 52.0 | 4.85e-01 | 94.8% | 75.4% |
| 7ri3D01 | 3.90.175.10 | Alpha Beta › Alpha-Beta Complex › Diphtheria Toxin; domain 1 › Diphtheria Toxin, domain 1 | 0.59 | 54.0 | 4.48e-01 | 100.0% | 87.9% |
| 1kacA00 | 2.60.90.10 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain | 0.52 | 38.0 | 3.34e-01 | 78.3% | 98.4% |
| 4jcmA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 33.0 | 3.48e-01 | 92.2% | 71.2% |
| 2oezA01 | 2.60.440.10 | Mainly Beta › Sandwich › YacF-like › YacF-like domains | 0.50 | 33.0 | 3.94e-01 | 87.8% | 100.0% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4995698 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.78 | 65.0 | 6.91e-01 | 92.2% | 99.0% |
| 5008044 | 237.1.1.4 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA | 0.69 | 53.0 | 5.77e-01 | 100.0% | 96.8% |
| 5060086 | 237.1.1.4 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA | 0.69 | 53.0 | 5.75e-01 | 100.0% | 96.8% |
| 4679144 | 237.1.1.4 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA | 0.69 | 53.0 | 5.74e-01 | 100.0% | 96.8% |
| 4994805 | 237.1.1.4 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA | 0.68 | 52.0 | 5.48e-01 | 100.0% | 89.3% |
| 3106804 | 237.1.1.4 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA | 0.68 | 52.0 | 5.50e-01 | 100.0% | 90.3% |
| 3638034 | 237.1.1.36 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › DUF7587 | 0.64 | 59.0 | 5.41e-01 | 99.1% | 96.6% |
| 3263193 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.61 | 53.0 | 4.62e-01 | 93.9% | 84.1% |
| 3675781 | 11.1.1.38 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_2 | 0.55 | 26.0 | 3.01e-01 | 71.3% | 60.0% |
D2
medium
residues 1-79
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gk4A00 | 3.40.50.10300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like | 0.55 | 48.0 | 3.53e-01 | 100.0% | 91.3% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4130586 | 207.2.1.87 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Ice_nucleation | 0.75 | 67.0 | 4.23e-01 | 97.5% | 22.1% |
| 3775495 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.72 | 63.0 | 4.41e-01 | 100.0% | 51.2% |
| 3788246 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.70 | 61.0 | 4.21e-01 | 100.0% | 40.7% |
| 3963707 | 207.14.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A | 0.67 | 53.0 | 5.34e-01 | 97.5% | 87.5% |
| 4969460 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.66 | 57.0 | 4.47e-01 | 100.0% | 72.2% |
| 4935713 | 207.14.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › Bactofilin | 0.66 | 55.0 | 4.93e-01 | 94.9% | 86.1% |
| 5039608 | 207.14.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A | 0.65 | 52.0 | 5.50e-01 | 92.4% | 98.6% |
| 5006685 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.63 | 53.0 | 4.52e-01 | 98.7% | 67.9% |
| 4069065 | 207.9.1.4 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Involucrin | 0.63 | 52.0 | 4.32e-01 | 94.9% | 56.0% |
| 4929387 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.62 | 50.0 | 5.22e-01 | 92.4% | 100.0% |
| 5033306 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.62 | 49.0 | 4.21e-01 | 88.6% | 54.8% |
| 3997590 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.60 | 43.0 | 4.72e-01 | 97.5% | 100.0% |
D3
medium
residues 80-167
Domain cluster:
rep: rifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00032__D1-79
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3jx8A00 | 2.160.20.120 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.84 | 76.0 | 5.44e-01 | 100.0% | 41.3% |
| 3ljyA00 | 2.160.20.120 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.83 | 76.0 | 5.46e-01 | 100.0% | 65.7% |
| 3ak5D02 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.82 | 75.0 | 4.37e-01 | 100.0% | 24.9% |
| 1k4zA00 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.81 | 74.0 | 6.08e-01 | 100.0% | 70.1% |
| 1k8fA00 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.81 | 74.0 | 6.06e-01 | 100.0% | 69.4% |
| 2b0rB00 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.80 | 73.0 | 5.93e-01 | 98.9% | 68.4% |
| 3bh7B01 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.79 | 71.0 | 5.47e-01 | 100.0% | 64.8% |
| 2yuhA01 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.78 | 70.0 | 5.62e-01 | 100.0% | 59.9% |
| 5gkdA02 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.76 | 68.0 | 4.75e-01 | 100.0% | 53.3% |
| 1k5cA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.76 | 68.0 | 4.55e-01 | 100.0% | 52.0% |
| 1h80B00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.75 | 67.0 | 4.29e-01 | 100.0% | 60.0% |
| 3eqnA02 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.75 | 68.0 | 4.46e-01 | 100.0% | 52.8% |
| 3riqA00 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.74 | 67.0 | 4.09e-01 | 100.0% | 33.1% |
| 4w8qA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.70 | 60.0 | 4.53e-01 | 100.0% | 85.5% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3937084 | 207.6.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C | 0.95 | 81.0 | 5.82e-01 | 100.0% | 36.6% |
| 4643528 | 208.2.1.11 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › Ice_nucleation | 0.90 | 84.0 | 7.72e-01 | 100.0% | 80.0% |
| 4130586 | 207.2.1.87 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Ice_nucleation | 0.89 | 84.0 | 5.28e-01 | 100.0% | 26.4% |
| 4663567 | 207.6.1.12 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C › Ice_nucleation | 0.89 | 82.0 | 4.85e-01 | 100.0% | 14.7% |
| 4301612 | 207.6.1.12 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C › Ice_nucleation | 0.88 | 81.0 | 5.15e-01 | 100.0% | 26.1% |
| 3711105 | 208.7.1.6 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Grass antifreeze protein › Grass antifreeze protein › Nucleoporin_FG | 0.86 | 71.0 | 5.89e-01 | 100.0% | 52.0% |
| 4968617 | 208.7.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Grass antifreeze protein › Grass antifreeze protein | 0.83 | 65.0 | 6.25e-01 | 100.0% | 73.0% |
| 4330418 | 207.6.1.6 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C › CRAM_rpt | 0.83 | 75.0 | 4.43e-01 | 100.0% | 19.8% |
| 1285094 | 207.2.1.18 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › DUF2807 | 0.82 | 75.0 | 5.38e-01 | 100.0% | 64.7% |
| 4012012 | 207.4.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like | 0.82 | 70.0 | 6.76e-01 | 93.2% | 99.0% |
| 3281086 | 207.4.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like | 0.79 | 72.0 | 5.98e-01 | 100.0% | 84.7% |
| 4024460 | 208.7.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Grass antifreeze protein › Grass antifreeze protein | 0.76 | 68.0 | 6.07e-01 | 100.0% | 70.4% |
| 3901107 | 207.6.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C | 0.76 | 68.0 | 6.12e-01 | 100.0% | 72.5% |
| 4935713 | 207.14.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › Bactofilin | 0.75 | 64.0 | 5.92e-01 | 95.5% | 100.0% |
| 4935712 | 207.14.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A | 0.75 | 65.0 | 5.51e-01 | 96.6% | 64.1% |
| 5040588 | 207.14.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A | 0.75 | 66.0 | 5.94e-01 | 100.0% | 77.6% |
| 4041561 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.74 | 63.0 | 4.49e-01 | 92.0% | 90.2% |
| 3330344 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.74 | 67.0 | 5.71e-01 | 100.0% | 64.3% |
| 3798319 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.73 | 66.0 | 5.66e-01 | 100.0% | 70.0% |
| 4028145 | 207.9.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats | 0.73 | 65.0 | 5.42e-01 | 100.0% | 70.1% |
| 4020264 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.73 | 64.0 | 6.05e-01 | 96.6% | 88.6% |
| 3963707 | 207.14.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A | 0.72 | 59.0 | 6.14e-01 | 92.0% | 100.0% |
| 5041137 | 207.14.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A | 0.71 | 51.0 | 5.54e-01 | 75.0% | 100.0% |
| 4028157 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.71 | 63.0 | 5.47e-01 | 100.0% | 77.0% |
| 5006685 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.70 | 62.0 | 5.32e-01 | 100.0% | 68.6% |
| 3787858 | 207.9.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats | 0.68 | 59.0 | 5.04e-01 | 100.0% | 61.3% |
| 4929387 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.66 | 48.0 | 5.26e-01 | 76.1% | 100.0% |
| 3803729 | 207.14.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A | 0.66 | 46.0 | 5.10e-01 | 94.3% | 100.0% |
| 3997590 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.60 | 40.0 | 4.61e-01 | 80.7% | 100.0% |