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rifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00042
Bact-Virrifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00042
Identity
- Kingdom:
- phage
Quality
79.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-111
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1nbwA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.65 | 37.0 | 3.45e-01 | 85.2% | 46.2% |
| 4bnqB00 | 3.90.950.10 | Alpha Beta › Alpha-Beta Complex › Maf protein › | 0.60 | 54.0 | 4.50e-01 | 100.0% | 94.3% |
| 2yn3B03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 31.0 | 3.71e-01 | 76.9% | 76.1% |
| 1hw7A01 | 3.55.30.10 | Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain | 0.58 | 47.0 | 4.06e-01 | 93.5% | 54.9% |
| 1f49A05 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.55 | 45.0 | 3.35e-01 | 88.9% | 91.7% |
| 2yrlA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 33.0 | 3.74e-01 | 79.6% | 80.7% |
| 4uv3E01 | 3.40.50.10610 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component | 0.54 | 49.0 | 3.97e-01 | 100.0% | 66.0% |
| 5irbA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 35.0 | 3.57e-01 | 79.6% | 68.3% |
| 2pndA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 40.0 | 3.91e-01 | 79.6% | 77.3% |
| 5icuA00 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 35.0 | 3.66e-01 | 79.6% | 72.5% |
| 3er7B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 34.0 | 3.31e-01 | 94.4% | 57.7% |
| 6wwdB00 | 3.90.950.10 | Alpha Beta › Alpha-Beta Complex › Maf protein › | 0.52 | 45.0 | 3.78e-01 | 98.1% | 92.6% |
| 3dlqR02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 34.0 | 3.55e-01 | 79.6% | 72.0% |
| 1wfuA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 33.0 | 3.50e-01 | 79.6% | 73.7% |
| 1ix2A00 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 37.0 | 3.84e-01 | 80.6% | 80.4% |
| 3kptA02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 37.0 | 3.36e-01 | 75.0% | 78.7% |
| 3h51A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 33.0 | 3.04e-01 | 90.7% | 50.7% |
| 2qddA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.50 | 43.0 | 4.10e-01 | 94.4% | 87.7% |
| 3dgcS01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 35.0 | 3.65e-01 | 80.6% | 76.5% |
ECOD (56)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4939185 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.65 | 48.0 | 4.61e-01 | 98.1% | 68.3% |
| 4270209 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.61 | 53.0 | 4.38e-01 | 94.4% | 99.0% |
| 3330582 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.61 | 46.0 | 4.38e-01 | 100.0% | 68.0% |
| 4056106 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.60 | 54.0 | 4.51e-01 | 99.1% | 91.6% |
| 4272620 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.60 | 52.0 | 4.17e-01 | 95.4% | 95.8% |
| 4110419 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.60 | 53.0 | 4.40e-01 | 98.1% | 98.5% |
| 4064677 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.60 | 52.0 | 4.25e-01 | 96.3% | 91.2% |
| 4985870 | 11.1.1.284 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 | 0.59 | 33.0 | 3.55e-01 | 79.6% | 63.2% |
| 4102271 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.59 | 53.0 | 4.26e-01 | 99.1% | 88.0% |
| 5038719 | 11.1.1.284 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 | 0.57 | 29.0 | 4.04e-01 | 72.2% | 98.2% |
| 5033989 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 30.0 | 4.02e-01 | 71.3% | 100.0% |
| 5030466 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 34.0 | 3.49e-01 | 79.6% | 61.9% |
| 3786132 | 330.1.1.4 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 | 0.56 | 45.0 | 4.10e-01 | 100.0% | 64.1% |
| 5060899 | 3414.1.1.0 ↗ | beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein | 0.56 | 33.0 | 3.69e-01 | 79.6% | 74.1% |
| 4968440 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 32.0 | 3.64e-01 | 79.6% | 72.9% |
| 5062865 | 11.1.1.284 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 | 0.56 | 33.0 | 3.60e-01 | 79.6% | 70.0% |
| 5073979 | 2485.2.1.1 ↗ | a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert | 0.56 | 48.0 | 4.86e-01 | 93.5% | 92.7% |
| 5071009 | 11.1.1.124 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glucodextran_B | 0.55 | 32.0 | 3.49e-01 | 79.6% | 68.9% |
| 4942385 | 2485.2.1.1 ↗ | a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert | 0.55 | 46.0 | 4.78e-01 | 90.7% | 96.0% |
| 2060725 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.55 | 33.0 | 3.90e-01 | 73.1% | 86.7% |
| 5062240 | 11.1.1.284 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 | 0.55 | 32.0 | 3.59e-01 | 79.6% | 72.9% |
| 4981086 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 33.0 | 3.65e-01 | 79.6% | 75.3% |
| 3027166 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 32.0 | 3.49e-01 | 79.6% | 68.5% |
| 5026985 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 31.0 | 3.54e-01 | 79.6% | 72.9% |
| 5062177 | 11.1.1.284 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 | 0.54 | 33.0 | 3.57e-01 | 79.6% | 72.2% |
| 5060238 | 11.1.1.533 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › HYR | 0.54 | 35.0 | 3.79e-01 | 79.6% | 77.8% |
| 4969944 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 32.0 | 3.94e-01 | 79.6% | 92.9% |
| 5026979 | 11.1.1.246 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_7 | 0.54 | 31.0 | 3.41e-01 | 79.6% | 68.9% |
| 4968439 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 32.0 | 3.54e-01 | 80.6% | 74.1% |
| 5059012 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 33.0 | 3.58e-01 | 79.6% | 73.3% |
| 4362772 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 28.0 | 3.75e-01 | 74.1% | 100.0% |
| 3266908 | 2485.2.1.1 ↗ | a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert | 0.53 | 45.0 | 4.73e-01 | 90.7% | 99.0% |
| 5077449 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 30.0 | 3.90e-01 | 78.7% | 100.0% |
| 5059243 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 33.0 | 3.60e-01 | 79.6% | 74.4% |
| 5027440 | 11.1.1.288 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_13 | 0.53 | 30.0 | 3.32e-01 | 79.6% | 67.8% |
| 5029907 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 30.0 | 3.39e-01 | 79.6% | 71.8% |
| 4979838 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 31.0 | 3.33e-01 | 79.6% | 67.8% |
| 5082113 | 11.1.1.284 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 | 0.53 | 31.0 | 3.27e-01 | 79.6% | 63.0% |
| 2650317 | 378.1.1.1 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_NS | 0.53 | 39.0 | 3.06e-01 | 90.7% | 37.6% |
| 5083566 | 11.1.1.284 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 | 0.53 | 32.0 | 3.64e-01 | 80.6% | 78.8% |
| 3414881 | 11.1.1.351 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › K319L-like_PKD | 0.53 | 32.0 | 3.55e-01 | 79.6% | 74.4% |
| 3996257 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 28.0 | 3.33e-01 | 74.1% | 76.0% |
| 5027231 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 31.0 | 3.46e-01 | 79.6% | 75.3% |
| 5047514 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 30.0 | 3.25e-01 | 79.6% | 66.7% |
| 4344089 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.52 | 27.0 | 3.68e-01 | 73.1% | 100.0% |
| 5046074 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 32.0 | 3.52e-01 | 79.6% | 74.4% |
| 4945316 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 31.0 | 3.33e-01 | 78.7% | 70.0% |
| 5027434 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 31.0 | 3.43e-01 | 79.6% | 72.2% |
| 5051724 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 36.0 | 3.80e-01 | 79.6% | 78.0% |
| 5046073 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 30.0 | 3.30e-01 | 79.6% | 68.9% |
| 5077858 | 11.1.1.94 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Y_Y_Y | 0.51 | 31.0 | 3.23e-01 | 79.6% | 65.0% |
| 3888093 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 31.0 | 3.39e-01 | 79.6% | 72.2% |
| 5068913 | 11.1.1.124 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glucodextran_B | 0.50 | 31.0 | 3.42e-01 | 79.6% | 74.4% |
| 3253012 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.50 | 34.0 | 3.59e-01 | 97.2% | 76.0% |
| 163996 | 218.1.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N | 0.50 | 43.0 | 4.13e-01 | 94.4% | 96.1% |
| 5007161 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 37.0 | 3.83e-01 | 98.1% | 83.0% |