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rifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00094
Bact-Virrifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00094
Identity
- Kingdom:
- phage
Quality
74.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-99
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vjhA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.68 | 48.0 | 4.49e-01 | 91.6% | 59.2% |
| 4r80A00 | 3.10.450.630 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 37.0 | 4.06e-01 | 74.7% | 72.4% |
| 2hc9A02 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.61 | 48.0 | 3.29e-01 | 85.3% | 47.5% |
| 4atnA03 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.60 | 43.0 | 3.45e-01 | 74.7% | 45.6% |
| 1yb3A00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.59 | 42.0 | 3.52e-01 | 97.9% | 43.0% |
| 3q63F00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.59 | 49.0 | 4.30e-01 | 90.5% | 66.2% |
| 1zbtA02 | 3.30.70.1660 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 47.0 | 3.85e-01 | 86.3% | 55.8% |
| 2wraA00 | 2.60.120.400 | Mainly Beta › Sandwich › Jelly Rolls › Calcium-mediated lectin | 0.57 | 50.0 | 4.67e-01 | 98.9% | 88.5% |
| 2bv4A00 | 2.60.120.400 | Mainly Beta › Sandwich › Jelly Rolls › Calcium-mediated lectin | 0.56 | 50.0 | 4.74e-01 | 98.9% | 90.3% |
| 2l6mA00 | 3.30.160.400 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.55 | 34.0 | 3.37e-01 | 85.3% | 57.4% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.55 | 40.0 | 4.12e-01 | 76.8% | 100.0% |
| 1lshA01 | 2.30.230.10 | Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A | 0.55 | 48.0 | 3.56e-01 | 98.9% | 89.4% |
| 8c46A01 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 44.0 | 4.19e-01 | 87.4% | 88.6% |
| 6zepA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.55 | 49.0 | 3.38e-01 | 100.0% | 86.5% |
| 3jtyB01 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.54 | 48.0 | 3.26e-01 | 100.0% | 99.2% |
| 2v8hA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 44.0 | 4.15e-01 | 87.4% | 87.9% |
| 4r60A01 | 3.40.350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain | 0.54 | 38.0 | 3.20e-01 | 72.6% | 84.6% |
| 2qv6B02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.54 | 42.0 | 3.85e-01 | 82.1% | 66.4% |
| 2hoxA03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.54 | 40.0 | 3.75e-01 | 76.8% | 85.0% |
| 7prrB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 40.0 | 3.34e-01 | 78.9% | 100.0% |
| 2yxdA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 41.0 | 3.26e-01 | 78.9% | 94.4% |
| 6j09A02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.54 | 39.0 | 4.17e-01 | 75.8% | 100.0% |
| 1jssA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 44.0 | 3.55e-01 | 92.6% | 61.3% |
| 3h3iA00 | 2.40.128.220 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 45.0 | 4.04e-01 | 95.8% | 92.8% |
| 2qv6A01 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.53 | 41.0 | 3.67e-01 | 81.1% | 64.1% |
| 4pxdA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 45.0 | 4.28e-01 | 93.7% | 83.5% |
| 6wubf01 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.53 | 41.0 | 4.19e-01 | 86.3% | 88.3% |
| 4pxeA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 43.0 | 4.05e-01 | 89.5% | 88.9% |
| 2q18X02 | 3.90.850.10 | Alpha Beta › Alpha-Beta Complex › Fumarylacetoacetate hydrolase; domain 2 › Fumarylacetoacetase-like, C-terminal domain | 0.52 | 43.0 | 3.39e-01 | 92.6% | 59.4% |
| 1em2A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 41.0 | 3.21e-01 | 87.4% | 67.3% |
| 4divV01 | 2.40.30.200 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.51 | 39.0 | 3.47e-01 | 81.1% | 94.9% |
| 3sybA00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.51 | 44.0 | 2.97e-01 | 100.0% | 90.7% |
| 6osuA01 | 2.60.410.10 | Mainly Beta › Sandwich › Peptidoglycan synthesis regulatory factor (PBP3), Domain 2 › D-Ala-D-Ala carboxypeptidase, C-terminal domain | 0.50 | 31.0 | 3.30e-01 | 72.6% | 68.6% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4060852 | 331.3.1.67 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PF28956 | 0.66 | 56.0 | 4.32e-01 | 90.5% | 64.5% |
| 3651251 | 331.3.1.5 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc | 0.66 | 55.0 | 4.24e-01 | 91.6% | 60.5% |
| 3611951 | 331.3.1.3 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START | 0.63 | 52.0 | 4.00e-01 | 91.6% | 60.0% |
| 3716632 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.63 | 57.0 | 4.90e-01 | 98.9% | 99.3% |
| 4951664 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.62 | 52.0 | 4.44e-01 | 90.5% | 57.3% |
| 1883359 | 312.1.1.14 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › HIT-like | 0.60 | 47.0 | 3.70e-01 | 85.3% | 68.8% |
| 3654824 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.60 | 43.0 | 3.95e-01 | 98.9% | 59.2% |
| 5044086 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.58 | 42.0 | 3.59e-01 | 78.9% | 45.6% |
| 3249792 | 244.1.1.17 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › RAE1_2_domI_C | 0.58 | 38.0 | 3.69e-01 | 100.0% | 59.1% |
| 4374003 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.58 | 49.0 | 4.91e-01 | 93.7% | 100.0% |
| 3492278 | 304.116.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor › PCRF | 0.58 | 48.0 | 4.24e-01 | 87.4% | 83.8% |
| 3741415 | 222.1.1.4 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT | 0.57 | 42.0 | 3.46e-01 | 77.9% | 42.9% |
| 3501950 | 2002.1.1.13 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red | 0.57 | 50.0 | 3.66e-01 | 98.9% | 98.5% |
| 4956201 | 304.6.1.1 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C | 0.57 | 46.0 | 3.45e-01 | 85.3% | 62.6% |
| 4236828 | 331.22.1.2 ↗ | a+b two layers › TBP-like › Outer membrane protein assembly factor BamC › Outer membrane protein assembly factor BamC › PF29358 | 0.57 | 46.0 | 3.59e-01 | 88.4% | 41.5% |
| 339577 | 10.6.1.1 ↗ | beta sandwiches › jelly-roll › Calcium-mediated lectin › Calcium-mediated lectin › PA-IIL | 0.57 | 51.0 | 4.62e-01 | 98.9% | 85.9% |
| 4973793 | 243.5.1.0 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region | 0.57 | 35.0 | 3.67e-01 | 71.6% | 66.7% |
| 4221224 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.56 | 45.0 | 4.34e-01 | 87.4% | 91.8% |
| 2886368 | 304.116.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor | 0.56 | 45.0 | 4.42e-01 | 85.3% | 90.1% |
| 3965978 | 10.6.1.1 ↗ | beta sandwiches › jelly-roll › Calcium-mediated lectin › Calcium-mediated lectin › PA-IIL | 0.55 | 49.0 | 4.65e-01 | 98.9% | 89.6% |
| 3018445 | 331.3.1.3 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START | 0.55 | 44.0 | 3.42e-01 | 90.5% | 52.5% |
| 3728906 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.55 | 44.0 | 4.19e-01 | 87.4% | 86.1% |
| 3895620 | 331.3.1.5 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc | 0.55 | 45.0 | 3.82e-01 | 91.6% | 58.2% |
| 3789706 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.55 | 38.0 | 3.12e-01 | 71.6% | 96.5% |
| 4957500 | 283.2.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like | 0.54 | 44.0 | 4.47e-01 | 90.5% | 92.6% |
| 3693212 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.54 | 43.0 | 3.75e-01 | 86.3% | 92.0% |
| 3968316 | 5084.5.1.4 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprD | 0.54 | 47.0 | 3.08e-01 | 98.9% | 91.5% |
| 4871888 | 226.1.1.4 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 | 0.54 | 32.0 | 3.49e-01 | 77.9% | 69.1% |
| 3732434 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.54 | 43.0 | 3.77e-01 | 87.4% | 92.4% |
| 5016939 | 223.1.1.189 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_3 | 0.53 | 39.0 | 3.21e-01 | 77.9% | 74.1% |
| 2321076 | 5084.5.1.11 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 | 0.53 | 46.0 | 3.23e-01 | 96.8% | 91.2% |
| 3378938 | 331.3.1.3 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START | 0.53 | 41.0 | 3.12e-01 | 86.3% | 69.0% |
| 1147767 | 304.48.1.22 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GCH_III | 0.53 | 41.0 | 3.67e-01 | 81.1% | 64.1% |
| 3272801 | 331.3.1.3 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START | 0.53 | 43.0 | 2.92e-01 | 90.5% | 23.7% |
| 4005147 | 2011.1.1.23 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › M20_dimer | 0.53 | 45.0 | 4.25e-01 | 93.7% | 83.5% |
| 3990361 | 304.4.1.52 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF7153 | 0.53 | 41.0 | 3.49e-01 | 86.3% | 50.6% |
| 3684969 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.52 | 45.0 | 4.22e-01 | 93.7% | 81.7% |
| 3196674 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.52 | 44.0 | 4.12e-01 | 93.7% | 83.3% |
| 3784681 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.51 | 42.0 | 3.11e-01 | 86.3% | 55.3% |
| 3635748 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.51 | 44.0 | 4.07e-01 | 93.7% | 83.3% |
| 4382604 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.51 | 39.0 | 3.85e-01 | 82.1% | 100.0% |
| 4344304 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.50 | 37.0 | 3.21e-01 | 77.9% | 86.7% |
| 146692 | 304.4.1.9 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Chlor_dismutase | 0.50 | 37.0 | 3.52e-01 | 94.7% | 65.8% |