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rifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00144
Bact-Virrifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00144
Identity
- Kingdom:
- phage
Quality
94.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-94
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4fpwB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.68 | 43.0 | 3.41e-01 | 87.2% | 34.2% |
| 5h9kA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.68 | 48.0 | 3.98e-01 | 95.3% | 41.6% |
| 2ig6A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.66 | 51.0 | 4.25e-01 | 81.4% | 81.1% |
| 3cmbA00 | 2.40.400.10 | Mainly Beta › Beta Barrel › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like | 0.64 | 54.0 | 3.83e-01 | 93.0% | 78.1% |
| 7wa9A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.63 | 44.0 | 3.67e-01 | 87.2% | 44.0% |
| 7vd7A01 | 3.10.450.530 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system | 0.62 | 44.0 | 4.29e-01 | 84.9% | 67.4% |
| 2a15A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 49.0 | 4.25e-01 | 87.2% | 87.2% |
| 1xuvA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.60 | 45.0 | 3.64e-01 | 79.1% | 57.7% |
| 3ecfA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 48.0 | 4.21e-01 | 87.2% | 75.8% |
| 2qpvA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 38.0 | 3.31e-01 | 86.0% | 44.7% |
| 3fh1A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 45.0 | 4.04e-01 | 86.0% | 83.6% |
| 4j5tA01 | 2.70.98.110 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycosyl hydrolase family 63, N-terminal domain | 0.56 | 49.0 | 3.34e-01 | 96.5% | 81.3% |
| 3h3hB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 44.0 | 3.92e-01 | 86.0% | 87.5% |
| 4mp8A01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.55 | 43.0 | 3.64e-01 | 89.5% | 61.5% |
| 3gp6A00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.55 | 45.0 | 3.77e-01 | 91.9% | 56.1% |
| 1avgI00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.55 | 45.0 | 3.85e-01 | 91.9% | 54.9% |
| 3oh8A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.54 | 39.0 | 3.38e-01 | 76.7% | 63.6% |
| 7zgmA01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.54 | 48.0 | 3.46e-01 | 98.8% | 43.9% |
| 3f7wA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 44.0 | 4.31e-01 | 87.2% | 100.0% |
| 3n8bA00 | 3.10.450.700 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 40.0 | 4.25e-01 | 96.5% | 90.7% |
| 1bywA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 41.0 | 3.88e-01 | 86.0% | 87.3% |
| 3otlA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 39.0 | 3.23e-01 | 87.2% | 43.8% |
| 4gyiA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 39.0 | 3.78e-01 | 79.1% | 100.0% |
| 1vlrA01 | 3.30.200.40 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Scavenger mRNA decapping enzyme, N-terminal domain | 0.52 | 41.0 | 4.03e-01 | 88.4% | 99.0% |
| 2xepB01 | 3.10.450.280 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 43.0 | 3.94e-01 | 89.5% | 88.6% |
| 4kujA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 42.0 | 3.50e-01 | 87.2% | 99.3% |
| 4wsqB00 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.52 | 46.0 | 3.17e-01 | 100.0% | 52.9% |
| 4js8A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 41.0 | 4.12e-01 | 86.0% | 100.0% |
| 1zylA01 | 3.30.200.70 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › | 0.52 | 39.0 | 4.31e-01 | 87.2% | 98.6% |
| 1ylnA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 39.0 | 3.63e-01 | 82.6% | 89.5% |
| 6f7bA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.52 | 44.0 | 3.02e-01 | 93.0% | 54.5% |
| 1v1qA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 38.0 | 3.51e-01 | 76.7% | 81.8% |
| 6zxfz01 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.52 | 42.0 | 3.73e-01 | 88.4% | 94.3% |
| 3hqxA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 39.0 | 3.67e-01 | 80.2% | 97.1% |
| 3u97A00 | 3.10.450.530 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system | 0.51 | 40.0 | 4.20e-01 | 84.9% | 94.8% |
| 4hz9B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 42.0 | 3.82e-01 | 94.2% | 95.9% |
| 3pg1A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.50 | 40.0 | 3.54e-01 | 87.2% | 82.2% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3243508 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.62 | 52.0 | 4.98e-01 | 90.7% | 94.0% |
| 3171148 | 12.3.1.9 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_81 | 0.60 | 52.0 | 3.48e-01 | 95.3% | 34.8% |
| 5039832 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.59 | 46.0 | 3.61e-01 | 81.4% | 64.8% |
| 3233965 | 59.1.1.9 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › EAF | 0.58 | 46.0 | 4.15e-01 | 86.0% | 65.8% |
| 3323188 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.57 | 47.0 | 4.43e-01 | 91.9% | 96.2% |
| 3961519 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.57 | 51.0 | 3.36e-01 | 96.5% | 66.0% |
| 4056618 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.57 | 38.0 | 3.33e-01 | 86.0% | 46.4% |
| 3438842 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.56 | 49.0 | 3.23e-01 | 94.2% | 46.3% |
| 3452428 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.56 | 49.0 | 3.21e-01 | 95.3% | 50.3% |
| 3314292 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.55 | 48.0 | 3.19e-01 | 94.2% | 48.0% |
| 5014399 | 206.1.1.9 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 | 0.55 | 47.0 | 3.57e-01 | 100.0% | 68.7% |
| 3828373 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.55 | 48.0 | 3.18e-01 | 94.2% | 49.1% |
| 4383895 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.54 | 47.0 | 3.28e-01 | 100.0% | 52.3% |
| 3230573 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.54 | 47.0 | 3.15e-01 | 100.0% | 46.4% |
| 5035308 | 206.1.1.9 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 | 0.54 | 47.0 | 3.66e-01 | 100.0% | 79.0% |
| 4533531 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.54 | 49.0 | 2.98e-01 | 100.0% | 67.3% |
| 4990437 | 206.1.1.9 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 | 0.54 | 46.0 | 3.53e-01 | 100.0% | 66.1% |
| 3763927 | 331.9.1.9 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › PF26171 | 0.54 | 41.0 | 3.75e-01 | 79.1% | 82.6% |
| 5011312 | 206.1.1.9 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 | 0.54 | 47.0 | 3.63e-01 | 100.0% | 79.0% |
| 3505929 | 206.1.1.9 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 | 0.54 | 46.0 | 3.75e-01 | 100.0% | 94.9% |
| 5029476 | 206.1.1.9 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 | 0.54 | 48.0 | 3.72e-01 | 98.8% | 82.2% |
| 3973549 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.53 | 48.0 | 3.31e-01 | 100.0% | 50.8% |
| 4270923 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.53 | 48.0 | 3.36e-01 | 100.0% | 66.8% |
| 3222820 | 519.1.1.1 ↗ | a+b two layers › mRNA decapping enzyme DcpS N-terminal domain › mRNA decapping enzyme DcpS N-terminal domain › mRNA decapping enzyme DcpS N-terminal domain › DcpS | 0.53 | 44.0 | 4.16e-01 | 94.2% | 96.3% |
| 4507137 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.53 | 48.0 | 2.98e-01 | 100.0% | 66.3% |
| 4986443 | 206.1.1.9 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 | 0.53 | 46.0 | 3.31e-01 | 100.0% | 58.9% |
| 3210000 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.53 | 47.0 | 2.98e-01 | 96.5% | 69.3% |
| 3198042 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.53 | 48.0 | 3.06e-01 | 100.0% | 68.8% |
| 3689198 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.53 | 49.0 | 2.98e-01 | 100.0% | 62.4% |
| 3196889 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.53 | 47.0 | 2.97e-01 | 98.8% | 70.1% |
| 3740166 | 206.1.1.28 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Haspin_kinase | 0.53 | 46.0 | 3.03e-01 | 96.5% | 58.9% |
| 3203304 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.52 | 47.0 | 2.93e-01 | 98.8% | 66.4% |
| 4029739 | 9.8.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Dipeptidyl peptidase I (cathepsin C), exclusion domain › Dipeptidyl peptidase I (cathepsin C), exclusion domain › CathepsinC_exc | 0.52 | 42.0 | 3.78e-01 | 90.7% | 62.5% |
| 5000331 | 206.1.1.9 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 | 0.52 | 43.0 | 3.30e-01 | 91.9% | 76.1% |
| 3640527 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.52 | 45.0 | 3.34e-01 | 93.0% | 52.1% |
| 3375692 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.52 | 43.0 | 2.99e-01 | 94.2% | 53.9% |
| 3199868 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.52 | 47.0 | 2.89e-01 | 100.0% | 60.6% |
| 3288333 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.51 | 45.0 | 3.17e-01 | 98.8% | 55.0% |
| 3526234 | 206.1.1.14 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › ABC1 | 0.51 | 45.0 | 2.94e-01 | 96.5% | 43.8% |
| 3175550 | 206.1.1.10 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase | 0.51 | 46.0 | 2.95e-01 | 98.8% | 63.1% |
| 3660499 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.51 | 44.0 | 3.02e-01 | 94.2% | 48.7% |
| 3698586 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.51 | 44.0 | 2.91e-01 | 100.0% | 42.5% |
| 3540014 | 243.1.1.40 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NXF_NTF2 | 0.51 | 46.0 | 4.02e-01 | 100.0% | 96.2% |
| 3727127 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.51 | 45.0 | 2.92e-01 | 100.0% | 66.6% |
| 3637832 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.50 | 45.0 | 2.83e-01 | 98.8% | 61.0% |
| 3205376 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.50 | 44.0 | 2.88e-01 | 98.8% | 67.9% |
| 4965154 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.50 | 43.0 | 2.93e-01 | 96.5% | 72.6% |