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rifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00147

Bact-Vir

rifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00147

Identity

Kingdom:
phage

Quality

86.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 49-127
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ig3A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.65 45.0 3.85e-01 72.2% 89.0%
2ifxA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 47.0 4.55e-01 78.5% 88.6%
1q8bA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 45.0 4.34e-01 81.0% 87.1%
3o2iA00 3.30.70.2710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 44.0 4.30e-01 93.7% 72.0%
3ke6B01 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.54 44.0 3.27e-01 92.4% 78.7%
2yy5A02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.53 40.0 3.49e-01 81.0% 87.4%
5mw8A01 3.30.200.110 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Inositol-pentakisphosphate 2-kinase, N-lobe 0.52 36.0 3.20e-01 72.2% 85.1%
4ob9A00 3.60.150.10 Alpha Beta › 4-Layer Sandwich › Chorismate synthase, AroC fold › Chorismate synthase AroC 0.52 41.0 2.78e-01 88.6% 55.3%
4fajA02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.52 39.0 3.47e-01 84.8% 88.7%
4ig1A00 3.10.520.10 Alpha Beta › Roll › T-fold › ApbE-like domains 0.51 44.0 2.98e-01 100.0% 64.3%
2xf4A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.51 44.0 3.33e-01 100.0% 91.9%
1aoaA01 1.10.418.10 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain 0.50 38.0 3.34e-01 81.0% 76.3%
2jifA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.50 34.0 3.02e-01 70.9% 73.7%
3lpxB02 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.50 40.0 3.82e-01 89.9% 87.2%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1141934 3162.1.1.1 ↗ a+b two layers › a functionally unknown protein from Leptospirillum sp. Group II UBA › a functionally unknown protein from Leptospirillum sp. Group II UBA › a functionally unknown protein from Leptospirillum sp. Group II UBA › DUF6840 0.59 45.0 4.27e-01 93.7% 69.8%
3947367 206.1.1.35 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH_6_hur 0.57 39.0 2.69e-01 70.9% 59.0%
4987322 230.1.1.0 ↗ a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like 0.57 49.0 4.59e-01 97.5% 87.0%
3909898 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.55 44.0 4.11e-01 86.1% 93.9%
3598156 230.4.1.0 ↗ a+b two layers › T-fold › ApbE-like › ApbE-like 0.55 47.0 3.59e-01 97.5% 94.4%
5075473 241.6.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits › ARPC4 0.54 37.0 2.97e-01 70.9% 41.9%
3606650 6132.1.1.0 ↗ alpha bundles › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain 0.54 42.0 3.87e-01 83.5% 91.4%
3739949 306.6.1.0 ↗ a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like 0.54 38.0 3.71e-01 73.4% 80.0%
4630575 230.3.1.1 ↗ a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS 0.53 46.0 3.98e-01 98.7% 100.0%
4002713 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.53 42.0 2.75e-01 88.6% 84.9%
4356087 230.4.1.1 ↗ a+b two layers › T-fold › ApbE-like › ApbE-like › ApbE 0.52 44.0 3.45e-01 97.5% 94.6%
4135761 305.1.1.0 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.52 41.0 3.63e-01 87.3% 93.3%
4029423 305.1.1.0 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.52 39.0 3.26e-01 83.5% 94.0%
4152050 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.52 35.0 2.82e-01 70.9% 67.3%
1873725 230.4.1.1 ↗ a+b two layers › T-fold › ApbE-like › ApbE-like › ApbE 0.51 43.0 3.35e-01 98.7% 92.0%
4174324 875.1.1.1 ↗ a+b two layers › Chorismate synthase, AroC › Chorismate synthase, AroC › Chorismate synthase, AroC › Chorismate_synt 0.51 41.0 2.73e-01 88.6% 50.0%
4161001 305.1.1.0 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.51 40.0 3.81e-01 86.1% 95.8%
3370741 206.1.1.70 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.51 37.0 2.49e-01 75.9% 39.8%
4930389 230.4.1.2 ↗ a+b two layers › T-fold › ApbE-like › ApbE-like › AbpE_bact 0.51 42.0 3.77e-01 94.9% 91.3%
3971234 230.5.1.3 ↗ a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › FliL 0.51 43.0 3.97e-01 97.5% 96.2%