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rifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00152
Bact-Virrifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00152
Identity
- Kingdom:
- phage
Quality
80.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 66-132
Domain cluster:
rep: KY554777.1__ARM67710.1__LW81_140__00140__D72-152
CATH (72)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ab5B01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.81 | 74.0 | 5.88e-01 | 100.0% | 59.4% |
| 1dq3A04 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.79 | 72.0 | 5.92e-01 | 100.0% | 57.9% |
| 3c0wA01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.76 | 67.0 | 5.49e-01 | 97.0% | 61.7% |
| 3ko2A00 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.76 | 69.0 | 5.13e-01 | 100.0% | 47.8% |
| 4efjA01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.76 | 70.0 | 5.40e-01 | 100.0% | 53.6% |
| 2vs7A02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.74 | 66.0 | 6.27e-01 | 100.0% | 84.6% |
| 1af5A00 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.73 | 66.0 | 5.34e-01 | 100.0% | 58.7% |
| 2dchX01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.72 | 62.0 | 5.58e-01 | 100.0% | 69.9% |
| 2ogkD00 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.67 | 47.0 | 3.71e-01 | 74.6% | 40.1% |
| 1xzwA01 | 2.60.40.380 | Mainly Beta › Sandwich › Immunoglobulin-like › Purple acid phosphatase-like, N-terminal | 0.64 | 49.0 | 4.36e-01 | 83.6% | 67.3% |
| 3g8wB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.63 | 52.0 | 4.00e-01 | 95.5% | 64.0% |
| 3gfhA01 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.63 | 47.0 | 4.09e-01 | 83.6% | 72.7% |
| 4kvxA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.62 | 54.0 | 4.21e-01 | 100.0% | 44.7% |
| 1q5yC00 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.61 | 44.0 | 4.16e-01 | 77.6% | 78.0% |
| 6ruiK00 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.61 | 46.0 | 4.08e-01 | 83.6% | 60.2% |
| 6gmhK00 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.61 | 46.0 | 3.91e-01 | 83.6% | 51.3% |
| 2i79D00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.61 | 53.0 | 4.01e-01 | 100.0% | 98.8% |
| 4m3sA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.61 | 53.0 | 4.06e-01 | 100.0% | 43.4% |
| 1j4wA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.61 | 42.0 | 4.11e-01 | 73.1% | 73.0% |
| 5vnxA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.61 | 47.0 | 3.86e-01 | 92.5% | 43.7% |
| 2joqA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.60 | 42.0 | 4.07e-01 | 73.1% | 66.7% |
| 4qjvB00 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.60 | 48.0 | 4.34e-01 | 88.1% | 64.9% |
| 2wnyA00 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.60 | 42.0 | 3.34e-01 | 73.1% | 39.4% |
| 2bj3D02 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.60 | 41.0 | 3.93e-01 | 73.1% | 61.7% |
| 8hbfB01 | 3.90.1520.10 | Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain | 0.60 | 50.0 | 3.82e-01 | 100.0% | 54.1% |
| 3f56A01 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.59 | 44.0 | 3.91e-01 | 83.6% | 69.8% |
| 2e9wB05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 46.0 | 4.25e-01 | 88.1% | 68.1% |
| 2r7hB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.59 | 51.0 | 3.93e-01 | 100.0% | 42.8% |
| 3rrkA03 | 3.30.70.2750 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 42.0 | 4.14e-01 | 77.6% | 71.6% |
| 1fc4A02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.58 | 45.0 | 3.71e-01 | 91.0% | 43.4% |
| 2qrvA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 49.0 | 3.51e-01 | 95.5% | 35.6% |
| 2jgtA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.58 | 46.0 | 3.70e-01 | 92.5% | 43.3% |
| 1t02A02 | 3.90.770.10 | Alpha Beta › Alpha-Beta Complex › 3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2 › 3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2 | 0.57 | 50.0 | 3.42e-01 | 100.0% | 47.1% |
| 2bwnB01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.57 | 45.0 | 3.51e-01 | 91.0% | 37.7% |
| 3hbxA03 | 3.90.1150.160 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.57 | 45.0 | 4.23e-01 | 91.0% | 69.3% |
| 2ebbA00 | 3.30.1360.20 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase | 0.57 | 47.0 | 4.18e-01 | 91.0% | 68.8% |
| 3evzA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 46.0 | 3.58e-01 | 94.0% | 39.2% |
| 2n8lA00 | 3.30.310.210 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.57 | 40.0 | 3.04e-01 | 77.6% | 72.3% |
| 2w7vA00 | 3.30.1360.100 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM | 0.57 | 48.0 | 4.53e-01 | 97.0% | 82.9% |
| 1dcoA00 | 3.30.1360.20 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase | 0.57 | 46.0 | 4.07e-01 | 91.0% | 67.7% |
| 3a2bA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.56 | 43.0 | 3.60e-01 | 91.0% | 44.7% |
| 3trgA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 41.0 | 3.74e-01 | 79.1% | 71.3% |
| 4bf8A00 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.56 | 40.0 | 3.29e-01 | 74.6% | 70.1% |
| 2h00B00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 45.0 | 3.32e-01 | 94.0% | 31.4% |
| 4oj3B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 43.0 | 3.88e-01 | 83.6% | 69.5% |
| 4djbA00 | 3.30.70.2870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 | 0.56 | 41.0 | 3.48e-01 | 79.1% | 70.3% |
| 1vdhA01 | 3.30.70.1030 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Apc35880; domain 1 | 0.56 | 41.0 | 3.47e-01 | 80.6% | 63.6% |
| 3orqA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.56 | 44.0 | 3.13e-01 | 86.6% | 68.2% |
| 3getA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.56 | 42.0 | 3.85e-01 | 92.5% | 59.6% |
| 5yppA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.56 | 38.0 | 3.56e-01 | 73.1% | 57.8% |
| 3s1tA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.56 | 38.0 | 3.69e-01 | 73.1% | 67.5% |
| 7zubC01 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.56 | 39.0 | 3.14e-01 | 74.6% | 75.6% |
| 3p96A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.55 | 37.0 | 3.51e-01 | 70.1% | 61.9% |
| 3lwsF02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.55 | 45.0 | 3.98e-01 | 92.5% | 63.5% |
| 2dbbA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.55 | 41.0 | 3.71e-01 | 80.6% | 66.7% |
| 1ejeA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 46.0 | 3.38e-01 | 95.5% | 63.0% |
| 2qckA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 44.0 | 3.52e-01 | 94.0% | 74.8% |
| 2dqlA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 47.0 | 4.01e-01 | 100.0% | 66.1% |
| 5lt5A02 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.54 | 42.0 | 3.75e-01 | 88.1% | 74.5% |
| 1xkpB00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.54 | 48.0 | 3.90e-01 | 97.0% | 76.0% |
| 2vfrA03 | 3.30.70.2530 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 36.0 | 3.39e-01 | 71.6% | 92.0% |
| 4uqvF02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.53 | 42.0 | 3.39e-01 | 91.0% | 42.8% |
| 3gz7B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 36.0 | 3.30e-01 | 73.1% | 56.1% |
| 5mmiU01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.52 | 40.0 | 3.85e-01 | 88.1% | 86.6% |
| 1lfwA03 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 38.0 | 3.61e-01 | 82.1% | 69.3% |
| 3zduA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 40.0 | 3.93e-01 | 86.6% | 85.5% |
| 8h68A01 | 2.60.120.590 | Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like | 0.52 | 41.0 | 2.97e-01 | 91.0% | 84.5% |
| 5hl8C00 | 3.30.1360.100 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM | 0.52 | 43.0 | 4.13e-01 | 98.5% | 82.3% |
| 1x19A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 41.0 | 3.24e-01 | 95.5% | 39.4% |
| 1sc6A03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.51 | 35.0 | 3.34e-01 | 73.1% | 62.2% |
| 3gkuA03 | 3.30.1370.50 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain | 0.51 | 41.0 | 4.14e-01 | 100.0% | 93.0% |
| 2iusD01 | 3.30.980.40 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › | 0.50 | 41.0 | 3.67e-01 | 92.5% | 83.7% |
ECOD (94)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5030026 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.85 | 78.0 | 6.98e-01 | 98.5% | 80.0% |
| 3205225 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.84 | 72.0 | 6.01e-01 | 100.0% | 56.4% |
| 4938000 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.83 | 76.0 | 6.70e-01 | 100.0% | 72.6% |
| 3738339 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.82 | 74.0 | 5.98e-01 | 100.0% | 63.2% |
| 5028136 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.82 | 75.0 | 6.17e-01 | 100.0% | 65.2% |
| 4096306 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.81 | 74.0 | 6.10e-01 | 100.0% | 63.5% |
| 4389430 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.81 | 73.0 | 6.14e-01 | 100.0% | 67.3% |
| 4653164 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.80 | 74.0 | 5.74e-01 | 100.0% | 61.5% |
| 4128067 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.79 | 72.0 | 6.04e-01 | 100.0% | 65.5% |
| 4059572 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.79 | 71.0 | 6.00e-01 | 100.0% | 66.4% |
| 4681936 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.78 | 70.0 | 5.84e-01 | 100.0% | 64.3% |
| 4221596 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.78 | 70.0 | 5.83e-01 | 100.0% | 63.5% |
| 4683313 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.78 | 70.0 | 5.77e-01 | 100.0% | 60.8% |
| 5029541 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.77 | 67.0 | 6.04e-01 | 100.0% | 70.0% |
| 4993483 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.77 | 68.0 | 5.82e-01 | 100.0% | 61.9% |
| 4934172 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.77 | 68.0 | 6.73e-01 | 97.0% | 97.1% |
| 4945933 | 242.1.1.2 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 | 0.77 | 69.0 | 5.62e-01 | 98.5% | 61.7% |
| 5013983 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.77 | 69.0 | 5.62e-01 | 100.0% | 55.0% |
| 4994373 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.76 | 62.0 | 6.04e-01 | 98.5% | 80.0% |
| 4941328 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.76 | 69.0 | 5.60e-01 | 100.0% | 57.5% |
| 3602727 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.75 | 68.0 | 6.13e-01 | 100.0% | 77.8% |
| 4996524 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.75 | 67.0 | 4.76e-01 | 100.0% | 34.4% |
| 3602264 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.75 | 64.0 | 5.93e-01 | 100.0% | 75.3% |
| 3602142 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.75 | 67.0 | 5.74e-01 | 100.0% | 77.1% |
| 4979990 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.74 | 67.0 | 5.33e-01 | 100.0% | 54.6% |
| 5030782 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.74 | 67.0 | 5.93e-01 | 100.0% | 72.6% |
| 5029220 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.74 | 66.0 | 5.99e-01 | 100.0% | 78.9% |
| 4978366 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.73 | 60.0 | 5.98e-01 | 98.5% | 85.7% |
| 5031915 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.73 | 64.0 | 5.90e-01 | 100.0% | 76.5% |
| 4992480 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.73 | 62.0 | 5.66e-01 | 100.0% | 71.1% |
| 4978933 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.73 | 62.0 | 6.11e-01 | 95.5% | 90.0% |
| 4937053 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.72 | 64.0 | 5.62e-01 | 100.0% | 78.0% |
| 5009157 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.72 | 64.0 | 5.45e-01 | 100.0% | 75.5% |
| 3602707 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.72 | 62.0 | 5.23e-01 | 100.0% | 56.5% |
| 5028789 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.72 | 63.0 | 5.76e-01 | 100.0% | 73.3% |
| 3950407 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.72 | 62.0 | 5.72e-01 | 100.0% | 74.4% |
| 4618987 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.72 | 62.0 | 5.15e-01 | 100.0% | 59.2% |
| 1159603 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.72 | 62.0 | 5.86e-01 | 100.0% | 80.2% |
| 4937023 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.71 | 64.0 | 5.59e-01 | 100.0% | 76.0% |
| 4998391 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.71 | 63.0 | 5.75e-01 | 100.0% | 76.7% |
| 5030027 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.71 | 61.0 | 5.00e-01 | 100.0% | 54.6% |
| 5027689 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.70 | 57.0 | 5.48e-01 | 100.0% | 77.5% |
| 4940944 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.69 | 59.0 | 4.92e-01 | 100.0% | 61.6% |
| 4171345 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.69 | 63.0 | 5.55e-01 | 100.0% | 77.9% |
| 5046395 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.69 | 61.0 | 5.88e-01 | 98.5% | 94.7% |
| 4975576 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.69 | 61.0 | 5.59e-01 | 100.0% | 75.6% |
| 3603087 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.68 | 56.0 | 5.30e-01 | 100.0% | 75.3% |
| 3667726 | 242.1.1.2 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 | 0.68 | 59.0 | 5.16e-01 | 100.0% | 65.0% |
| 4993815 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.68 | 56.0 | 5.23e-01 | 100.0% | 74.1% |
| 4405102 | 242.1.1.8 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3, Intein_splicing | 0.67 | 59.0 | 3.85e-01 | 100.0% | 24.3% |
| 5009161 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.67 | 59.0 | 3.84e-01 | 100.0% | 24.3% |
| 5022418 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.66 | 46.0 | 4.65e-01 | 73.1% | 73.8% |
| 4155057 | 242.1.1.2 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 | 0.66 | 56.0 | 5.03e-01 | 100.0% | 68.4% |
| 3170512 | 242.1.1.2 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 | 0.66 | 56.0 | 4.79e-01 | 100.0% | 59.1% |
| 3500318 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.65 | 46.0 | 3.74e-01 | 74.6% | 39.2% |
| 4937614 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.65 | 57.0 | 4.48e-01 | 100.0% | 53.1% |
| 5054097 | 305.1.1.10 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › PF27806 | 0.64 | 49.0 | 4.53e-01 | 83.6% | 64.7% |
| 4943823 | 304.162.1.0 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain | 0.63 | 44.0 | 4.16e-01 | 73.1% | 62.5% |
| 3290652 | 306.2.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor | 0.63 | 55.0 | 5.01e-01 | 100.0% | 76.7% |
| 3815383 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.61 | 45.0 | 4.28e-01 | 83.6% | 71.8% |
| 4065684 | 3016.1.1.1 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 | 0.60 | 45.0 | 3.52e-01 | 91.0% | 35.6% |
| 1933624 | 304.54.1.2 ↗ | a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like › CsoS1D_N | 0.60 | 45.0 | 4.06e-01 | 83.6% | 72.2% |
| 4956507 | 882.1.1.4 ↗ | a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding | 0.59 | 42.0 | 3.41e-01 | 74.6% | 37.0% |
| 4333296 | 3016.1.1.1 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 | 0.59 | 47.0 | 3.89e-01 | 92.5% | 46.9% |
| 3315331 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.59 | 45.0 | 4.31e-01 | 83.6% | 72.5% |
| 4991974 | 882.1.1.4 ↗ | a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding | 0.59 | 41.0 | 3.30e-01 | 74.6% | 35.7% |
| 4937732 | 305.2.1.1 ↗ | a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin_4a | 0.58 | 47.0 | 4.32e-01 | 91.0% | 72.2% |
| 4225320 | 306.3.1.4 ↗ | a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › PFF1_C | 0.57 | 44.0 | 3.92e-01 | 88.1% | 60.0% |
| 3307398 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.57 | 43.0 | 3.74e-01 | 83.6% | 58.2% |
| 4277035 | 310.3.1.4 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › GspL_C | 0.57 | 47.0 | 4.52e-01 | 97.0% | 88.7% |
| 4009838 | 310.3.1.4 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › GspL_C | 0.57 | 47.0 | 4.50e-01 | 97.0% | 90.0% |
| 3325750 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.57 | 43.0 | 4.11e-01 | 83.6% | 71.2% |
| 3369744 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.57 | 42.0 | 3.64e-01 | 83.6% | 56.5% |
| 4165369 | 3016.1.1.1 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 | 0.57 | 44.0 | 3.69e-01 | 91.0% | 46.9% |
| 3807253 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.56 | 42.0 | 4.03e-01 | 83.6% | 72.5% |
| 3683127 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.56 | 41.0 | 4.38e-01 | 80.6% | 100.0% |
| 3298082 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.55 | 41.0 | 3.80e-01 | 83.6% | 63.4% |
| 3456962 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.55 | 42.0 | 3.95e-01 | 83.6% | 69.0% |
| 3825541 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.55 | 41.0 | 3.60e-01 | 83.6% | 61.8% |
| 4926903 | 3016.1.1.1 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 | 0.55 | 42.0 | 3.85e-01 | 95.5% | 61.2% |
| 4091857 | 310.3.1.4 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › GspL_C | 0.55 | 45.0 | 3.75e-01 | 95.5% | 55.4% |
| 3675774 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.55 | 41.0 | 3.86e-01 | 83.6% | 68.2% |
| 3659065 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.55 | 41.0 | 3.68e-01 | 83.6% | 65.0% |
| 4138832 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.54 | 40.0 | 3.75e-01 | 83.6% | 74.2% |
| 3824912 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.54 | 40.0 | 3.88e-01 | 83.6% | 72.5% |
| 3667551 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.54 | 44.0 | 4.07e-01 | 94.0% | 92.2% |
| 3367405 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.53 | 39.0 | 3.49e-01 | 83.6% | 56.4% |
| 2559832 | 3016.1.1.1 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 | 0.53 | 43.0 | 3.77e-01 | 92.5% | 58.1% |
| 3816023 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.53 | 39.0 | 3.81e-01 | 83.6% | 71.2% |
| 4651861 | 7006.1.1.1 ↗ | extended segments › mitochondrial aminolevulinate synthase C-terminal domain › mitochondrial aminolevulinate synthase C-terminal domain › mitochondrial aminolevulinate synthase C-terminal domain › Aminotran_1_2 | 0.52 | 41.0 | 3.36e-01 | 97.0% | 41.3% |
| 5010022 | 304.39.1.0 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain | 0.52 | 37.0 | 3.41e-01 | 73.1% | 64.7% |
| 3832697 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.51 | 37.0 | 3.50e-01 | 85.1% | 66.3% |
| 3196620 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.51 | 36.0 | 2.52e-01 | 76.1% | 60.8% |
| 3831627 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.50 | 37.0 | 3.57e-01 | 83.6% | 71.2% |
D2
high
residues 174-281
Domain cluster:
rep: IMGVR_UViG_3300027815_000166-3300027815-Ga0209726_100069296__D104-209
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14528.12 best | LAGLIDADG_3 | 44.9 | 1.60e-11 | 77.8% | 95.1% |
D3
medium
residues 1-64
D4
medium
residues 285-359
Domain cluster:
rep: IMGVR_UViG_3300045988_039364-3300045988-Ga0495776_000344_76889_77461__D110-188
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u3eM02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.91 | 62.0 | 6.54e-01 | 70.7% | 77.9% |
| 4gi3C00 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.68 | 37.0 | 4.13e-01 | 73.3% | 68.4% |
| 1w1oA02 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.62 | 35.0 | 3.00e-01 | 70.7% | 32.3% |
| 1wh2A01 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.60 | 38.0 | 4.07e-01 | 78.7% | 77.0% |
| 2nmlA00 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.55 | 40.0 | 3.66e-01 | 77.3% | 81.0% |
| 1gxrA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 37.0 | 2.56e-01 | 81.3% | 84.2% |
| 1khbA03 | 3.90.228.20 | Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › | 0.51 | 36.0 | 2.46e-01 | 73.3% | 25.6% |
| 4ofyD01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 36.0 | 3.31e-01 | 77.3% | 67.0% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2876 | 101.1.14.2 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › I-HmuI_NUMOD-like | 0.91 | 62.0 | 6.50e-01 | 70.7% | 76.8% |
| 4414927 | 101.1.14.3 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 | 0.74 | 50.0 | 5.25e-01 | 70.7% | 81.2% |
| 3333626 | 822.1.1.0 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain | 0.67 | 42.0 | 4.67e-01 | 78.7% | 80.0% |
| 3805835 | 4121.1.1.2 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like | 0.64 | 50.0 | 3.46e-01 | 86.7% | 86.8% |
| 3368299 | 4121.1.1.2 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like | 0.63 | 51.0 | 3.46e-01 | 89.3% | 87.9% |
| 3266341 | 4121.1.1.2 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like | 0.61 | 48.0 | 3.45e-01 | 89.3% | 89.2% |
| 5064213 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.58 | 44.0 | 2.94e-01 | 84.0% | 94.3% |
| 4024679 | 822.1.1.1 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF | 0.58 | 37.0 | 4.04e-01 | 78.7% | 81.7% |
| 5082591 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.57 | 43.0 | 2.87e-01 | 84.0% | 91.0% |
| 3992794 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.57 | 38.0 | 2.64e-01 | 70.7% | 30.7% |
| 3890381 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.56 | 38.0 | 3.77e-01 | 70.7% | 91.3% |
| 3553026 | 221.1.1.4 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 | 0.56 | 39.0 | 3.68e-01 | 74.7% | 80.0% |
| 3688876 | 1.1.1.27 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_N | 0.56 | 44.0 | 2.79e-01 | 86.7% | 39.5% |
| 4226244 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.55 | 40.0 | 3.48e-01 | 77.3% | 96.5% |
| 4064436 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.55 | 40.0 | 3.53e-01 | 77.3% | 100.0% |
| 4964418 | 2485.1.1.4 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › AhpC-TSA | 0.55 | 42.0 | 3.32e-01 | 84.0% | 81.8% |
| 3252277 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.55 | 40.0 | 3.75e-01 | 76.0% | 86.7% |
| 3896089 | 221.1.1.4 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 | 0.54 | 38.0 | 3.71e-01 | 74.7% | 90.6% |
| 3296049 | 4121.1.1.2 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like | 0.54 | 45.0 | 3.37e-01 | 100.0% | 98.2% |
| 4566976 | 375.14.2.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS2) | 0.54 | 29.0 | 3.68e-01 | 70.7% | 95.0% |
| 3618723 | 221.1.1.4 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 | 0.52 | 37.0 | 3.66e-01 | 74.7% | 92.5% |
| 3824135 | 10.12.1.73 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › DIOX_N | 0.52 | 40.0 | 2.88e-01 | 86.7% | 78.6% |
| 3505268 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.51 | 35.0 | 2.88e-01 | 70.7% | 65.9% |
| 3475431 | 133.1.1.0 ↗ | alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) | 0.51 | 39.0 | 2.73e-01 | 81.3% | 55.4% |
| 3562400 | 221.1.1.89 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Il2rg | 0.51 | 38.0 | 3.37e-01 | 81.3% | 95.7% |
| 1392732 | 221.1.1.4 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 | 0.51 | 34.0 | 2.96e-01 | 70.7% | 45.2% |
D5
medium
residues 411-472
Domain cluster:
rep: OP310984.1__UXD83619.1__NP274_00212__00212__D3-72
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u3eM02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.81 | 72.0 | 6.99e-01 | 100.0% | 91.2% |
| 3myxB01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.72 | 41.0 | 3.22e-01 | 85.5% | 28.7% |
| 1o5uA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.70 | 40.0 | 3.56e-01 | 85.5% | 39.8% |
| 3bcwA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.68 | 39.0 | 3.29e-01 | 85.5% | 33.7% |
| 3fmaA00 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.66 | 42.0 | 3.88e-01 | 91.9% | 50.6% |
| 1u1sA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 46.0 | 4.57e-01 | 87.1% | 72.7% |
| 3hfnA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 46.0 | 4.66e-01 | 87.1% | 78.3% |
| 4gi3C00 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.63 | 40.0 | 4.17e-01 | 90.3% | 70.2% |
| 1o54A01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.62 | 48.0 | 4.60e-01 | 85.5% | 80.6% |
| 1kq1H00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 46.0 | 4.50e-01 | 87.1% | 74.2% |
| 3mb5A01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.61 | 47.0 | 4.77e-01 | 85.5% | 91.9% |
| 1i9gA01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.60 | 46.0 | 4.61e-01 | 85.5% | 90.6% |
| 2ej9A02 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 41.0 | 4.62e-01 | 82.3% | 93.9% |
| 1a21B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 38.0 | 3.27e-01 | 91.9% | 42.9% |
| 1m5q101 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 46.0 | 4.50e-01 | 85.5% | 82.4% |
| 2k57A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 45.0 | 4.78e-01 | 85.5% | 94.5% |
| 1wh2A01 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.57 | 35.0 | 3.60e-01 | 82.3% | 62.3% |
| 1d3bC00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 46.0 | 4.37e-01 | 85.5% | 84.5% |
| 4c92B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 45.0 | 3.72e-01 | 85.5% | 59.0% |
| 3bs3A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.56 | 41.0 | 4.22e-01 | 79.0% | 93.3% |
| 4dguA01 | 2.60.40.2680 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 37.0 | 3.07e-01 | 87.1% | 38.4% |
| 6v4xC01 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 44.0 | 3.73e-01 | 85.5% | 60.0% |
| 1qr4A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 36.0 | 3.26e-01 | 87.1% | 48.3% |
| 3laaA00 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.54 | 44.0 | 3.27e-01 | 95.2% | 33.7% |
| 1y96A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 43.0 | 3.86e-01 | 85.5% | 64.0% |
| 2e12A00 | 2.30.30.720 | Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) | 0.54 | 43.0 | 3.72e-01 | 85.5% | 69.9% |
| 2yn5A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 36.0 | 3.34e-01 | 87.1% | 54.4% |
| 2bkfA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.54 | 35.0 | 3.28e-01 | 87.1% | 50.6% |
| 3cp3A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 41.0 | 3.25e-01 | 91.9% | 40.9% |
| 1vl7A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 42.0 | 3.28e-01 | 93.5% | 40.0% |
| 1wi0A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.53 | 40.0 | 3.36e-01 | 85.5% | 88.5% |
| 2jvuA00 | 2.60.40.2290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 42.0 | 3.64e-01 | 100.0% | 56.1% |
| 4kncA02 | 2.60.120.1380 | Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module | 0.52 | 42.0 | 3.35e-01 | 91.9% | 45.3% |
| 6m3aA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 36.0 | 3.57e-01 | 85.5% | 68.2% |
| 1unnC00 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.52 | 41.0 | 3.36e-01 | 87.1% | 46.8% |
| 2f4nB02 | 2.40.30.90 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like | 0.52 | 44.0 | 3.80e-01 | 91.9% | 71.3% |
| 2iciA01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.52 | 41.0 | 3.24e-01 | 91.9% | 84.6% |
| 2htdB00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 40.0 | 3.22e-01 | 91.9% | 42.7% |
| 1yloE02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.51 | 41.0 | 3.66e-01 | 85.5% | 66.7% |
| 2fg9A01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 39.0 | 2.93e-01 | 91.9% | 32.7% |
| 1et9A01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.51 | 43.0 | 3.64e-01 | 98.4% | 97.3% |
| 4iajA00 | 3.30.1490.390 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 | 0.51 | 36.0 | 3.43e-01 | 88.7% | 61.8% |
| 3bh1A03 | 3.40.140.40 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Domain of unknown function (DUF1846), C-terminal subdomain | 0.51 | 41.0 | 3.12e-01 | 88.7% | 73.3% |
| 3dlqR02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 35.0 | 3.05e-01 | 96.8% | 46.0% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2876 | 101.1.14.2 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › I-HmuI_NUMOD-like | 0.81 | 72.0 | 6.95e-01 | 100.0% | 89.9% |
| 5011952 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.72 | 41.0 | 3.82e-01 | 85.5% | 46.7% |
| 4199672 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.70 | 40.0 | 3.45e-01 | 85.5% | 36.8% |
| 4384880 | 101.1.14.3 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 | 0.69 | 58.0 | 5.32e-01 | 100.0% | 75.3% |
| 4414927 | 101.1.14.3 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 | 0.68 | 58.0 | 5.67e-01 | 100.0% | 95.7% |
| 3171408 | 101.1.14.3 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 | 0.68 | 49.0 | 5.23e-01 | 77.4% | 98.0% |
| 3333626 | 822.1.1.0 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain | 0.67 | 42.0 | 4.34e-01 | 85.5% | 66.7% |
| 3415617 | 379.1.1.1 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_1 | 0.67 | 42.0 | 4.62e-01 | 90.3% | 80.0% |
| 3400250 | 379.1.1.3 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 | 0.66 | 43.0 | 4.73e-01 | 90.3% | 84.0% |
| 3621342 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.65 | 52.0 | 4.56e-01 | 90.3% | 80.0% |
| 3941506 | 2002.1.1.16 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase | 0.64 | 45.0 | 2.85e-01 | 100.0% | 14.0% |
| 3308182 | 822.1.1.2 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 | 0.63 | 40.0 | 3.62e-01 | 87.1% | 45.6% |
| 1263519 | 4.1.1.96 ↗ | beta barrels › SH3 › SH3 › SH3 › Hfq | 0.62 | 46.0 | 4.67e-01 | 87.1% | 79.0% |
| 4359892 | 4.1.1.96 ↗ | beta barrels › SH3 › SH3 › SH3 › Hfq | 0.62 | 46.0 | 4.24e-01 | 87.1% | 61.3% |
| 3404255 | 379.1.1.1 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_1 | 0.62 | 42.0 | 4.53e-01 | 90.3% | 88.0% |
| 3805835 | 4121.1.1.2 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like | 0.61 | 48.0 | 3.17e-01 | 85.5% | 27.2% |
| 3036710 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 45.0 | 4.51e-01 | 85.5% | 76.2% |
| 4961835 | 377.9.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like | 0.61 | 42.0 | 4.02e-01 | 88.7% | 61.6% |
| 4163851 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.60 | 44.0 | 4.51e-01 | 85.5% | 80.0% |
| 135648 | 4.1.1.142 ↗ | beta barrels › SH3 › SH3 › SH3 › Hfq_1 | 0.60 | 46.0 | 4.52e-01 | 87.1% | 76.9% |
| 4451993 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.59 | 43.0 | 4.43e-01 | 85.5% | 80.0% |
| 4031509 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 43.0 | 4.45e-01 | 85.5% | 81.7% |
| 3901407 | 4357.1.1.0 ↗ | beta barrels › WWE domain › WWE domain › WWE domain | 0.57 | 47.0 | 4.22e-01 | 96.8% | 76.8% |
| 3740204 | 4.1.1.71 ↗ | beta barrels › SH3 › SH3 › SH3 › Gemin7 | 0.57 | 46.0 | 4.11e-01 | 87.1% | 67.1% |
| 4221708 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.56 | 45.0 | 4.35e-01 | 85.5% | 78.6% |
| 4135543 | 221.1.1.17 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Stap_Strp_tox_C | 0.56 | 45.0 | 3.72e-01 | 91.9% | 95.0% |
| 3622068 | 221.1.1.4 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 | 0.56 | 41.0 | 3.67e-01 | 79.0% | 91.1% |
| 2557227 | 4.7.1.2 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF | 0.56 | 44.0 | 4.10e-01 | 85.5% | 68.8% |
| 3663256 | 221.1.1.4 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 | 0.56 | 43.0 | 3.51e-01 | 85.5% | 81.7% |
| 4937731 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 42.0 | 4.28e-01 | 83.9% | 83.3% |
| 4994 | 822.1.1.1 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF | 0.55 | 36.0 | 3.43e-01 | 87.1% | 55.1% |
| 3942526 | 4.1.1.257 ↗ | beta barrels › SH3 › SH3 › SH3 › Flag1_repress | 0.54 | 45.0 | 4.00e-01 | 88.7% | 65.9% |
| 3173409 | 221.1.1.4 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 | 0.53 | 44.0 | 3.77e-01 | 95.2% | 93.3% |
| 3698553 | 4012.3.1.0 ↗ | a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 | 0.53 | 43.0 | 4.51e-01 | 90.3% | 100.0% |
| 3925464 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.53 | 41.0 | 3.78e-01 | 85.5% | 97.5% |
| 5053740 | 12.6.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related | 0.53 | 42.0 | 3.48e-01 | 87.1% | 83.5% |
| 4023915 | 220.1.1.53 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › ISP1_C | 0.52 | 41.0 | 3.48e-01 | 91.9% | 78.3% |
| 4566976 | 375.14.2.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS2) | 0.52 | 30.0 | 3.54e-01 | 82.3% | 87.5% |
| 3838194 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.52 | 35.0 | 3.98e-01 | 72.6% | 97.8% |
| 4014245 | 4139.1.1.0 ↗ | a+b two layers › AMMECR1-like › AMMECR1-like › AMMECR1-like | 0.52 | 42.0 | 4.06e-01 | 93.5% | 87.1% |
| 3618723 | 221.1.1.4 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 | 0.52 | 38.0 | 3.54e-01 | 90.3% | 62.5% |
| 3536857 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.51 | 41.0 | 3.10e-01 | 100.0% | 34.5% |
| 3575279 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.50 | 36.0 | 3.33e-01 | 90.3% | 58.7% |