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rifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00156
Bact-Virrifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00156
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 20-79
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6p10B02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.62 | 42.0 | 3.74e-01 | 71.7% | 48.4% |
| 2ewtA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.57 | 40.0 | 3.87e-01 | 76.7% | 87.3% |
| 2dzlA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.53 | 36.0 | 3.53e-01 | 73.3% | 63.6% |
| 1ujoA00 | 1.10.418.10 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain | 0.51 | 42.0 | 3.33e-01 | 100.0% | 62.5% |
| 3l9vC00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 39.0 | 2.99e-01 | 95.0% | 93.4% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3429258 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.55 | 42.0 | 3.86e-01 | 88.3% | 77.6% |
| 163972 | 103.1.1.28 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_8 | 0.53 | 36.0 | 3.53e-01 | 73.3% | 63.6% |
| 3577314 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.51 | 34.0 | 2.68e-01 | 71.7% | 45.3% |
D2
medium
residues 80-154
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1pbyA02 | 2.40.128.120 | Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 | 0.68 | 50.0 | 4.45e-01 | 77.3% | 100.0% |
| 4h75A00 | 2.80.10.70 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty | 0.63 | 49.0 | 3.69e-01 | 86.7% | 37.7% |
| 2avwD01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.62 | 52.0 | 4.27e-01 | 93.3% | 74.5% |
| 1ukfA00 | 3.90.70.20 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.61 | 53.0 | 3.93e-01 | 94.7% | 51.1% |
| 4rudA00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.60 | 33.0 | 3.68e-01 | 73.3% | 69.0% |
| 3buuB00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.60 | 45.0 | 3.36e-01 | 85.3% | 91.8% |
| 1yemB00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.59 | 40.0 | 3.15e-01 | 70.7% | 46.4% |
| 7bjkA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.57 | 38.0 | 3.30e-01 | 73.3% | 46.0% |
| 3x29A00 | 1.20.140.150 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.56 | 41.0 | 3.14e-01 | 76.0% | 79.5% |
| 1xdnA02 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.56 | 40.0 | 3.17e-01 | 74.7% | 66.5% |
| 3asiA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 46.0 | 3.53e-01 | 92.0% | 81.5% |
| 6udkD00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 48.0 | 4.09e-01 | 100.0% | 83.1% |
| 4nx9A02 | 2.60.40.4390 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 40.0 | 3.52e-01 | 78.7% | 72.7% |
| 1gqgC02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 45.0 | 3.40e-01 | 90.7% | 48.1% |
| 1fhoA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 40.0 | 3.48e-01 | 78.7% | 71.4% |
| 4avaA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 40.0 | 3.29e-01 | 80.0% | 69.4% |
| 2r41A00 | 3.10.450.150 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein | 0.54 | 36.0 | 3.25e-01 | 73.3% | 49.5% |
| 2jwpA00 | 2.60.120.430 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin | 0.54 | 45.0 | 3.41e-01 | 90.7% | 98.3% |
| 2o8rB02 | 3.30.1840.10 | Alpha Beta › 2-Layer Sandwich › polyphosphate kinase like › Polyphosphate kinase middle domain | 0.54 | 46.0 | 3.65e-01 | 96.0% | 94.2% |
| 1qu0C00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 43.0 | 3.34e-01 | 93.3% | 80.3% |
| 3m9qA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 42.0 | 4.29e-01 | 88.0% | 98.6% |
| 4faoC00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.53 | 33.0 | 3.38e-01 | 74.7% | 64.0% |
| 4r8tB02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.52 | 38.0 | 3.87e-01 | 88.0% | 79.5% |
| 3azwA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 45.0 | 3.24e-01 | 98.7% | 78.7% |
| 3nutB02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.51 | 42.0 | 3.60e-01 | 94.7% | 78.1% |
| 4ic5A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.51 | 41.0 | 3.74e-01 | 90.7% | 67.3% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3684527 | 221.1.5.3 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Chemotaxis inhibitory protein CHIPS › DUF7734 | 0.66 | 49.0 | 4.61e-01 | 78.7% | 66.7% |
| 3574840 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.66 | 51.0 | 4.09e-01 | 82.7% | 86.9% |
| 4348182 | 382.1.1.7 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_cobra-type | 0.66 | 35.0 | 3.92e-01 | 76.0% | 67.2% |
| 3249359 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.65 | 48.0 | 4.05e-01 | 78.7% | 76.0% |
| 3621943 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.63 | 49.0 | 4.12e-01 | 85.3% | 78.5% |
| 3774692 | 4.1.1.31 ↗ | beta barrels › SH3 › SH3 › SH3 › Spin-Ssty | 0.62 | 54.0 | 5.33e-01 | 98.7% | 91.3% |
| 3373330 | 4.1.1.337 ↗ | beta barrels › SH3 › SH3 › SH3 › CSD_RNase_II | 0.59 | 46.0 | 4.62e-01 | 90.7% | 84.0% |
| 4063634 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.59 | 52.0 | 4.42e-01 | 98.7% | 79.8% |
| 1348620 | 221.11.1.1 ↗ | a+b two layers › beta-Grasp › beta-grasp fold domain in probable beta-lactamase › beta-grasp fold domain in probable beta-lactamase › DUF4888 | 0.58 | 42.0 | 4.26e-01 | 84.0% | 75.3% |
| 3964308 | 1.1.13.37 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2163 | 0.58 | 41.0 | 3.39e-01 | 73.3% | 71.9% |
| 5033093 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 50.0 | 4.38e-01 | 98.7% | 99.1% |
| 5006089 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 43.0 | 4.72e-01 | 86.7% | 100.0% |
| 3248228 | 247.1.1.29 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2, Anti-Pycsar_Apyc1 | 0.56 | 39.0 | 2.26e-01 | 72.0% | 49.6% |
| 5008350 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 45.0 | 4.50e-01 | 94.7% | 91.3% |
| 4115981 | 10.32.1.14 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_11 | 0.56 | 48.0 | 3.75e-01 | 98.7% | 88.8% |
| 3618502 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.55 | 50.0 | 3.96e-01 | 100.0% | 91.3% |
| 3833580 | 10.12.1.3 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 | 0.55 | 46.0 | 3.33e-01 | 93.3% | 42.7% |
| 3184389 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 45.0 | 3.51e-01 | 96.0% | 88.6% |
| 3583571 | 833.1.1.0 ↗ | a+b duplicates or obligate multimers › Pepsin inhibitor-3 › Pepsin inhibitor-3 › Pepsin inhibitor-3 | 0.53 | 35.0 | 3.14e-01 | 88.0% | 47.2% |
| 3707090 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.53 | 34.0 | 3.47e-01 | 72.0% | 65.3% |
| 3559960 | 2006.1.6.66 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF4537 | 0.53 | 43.0 | 4.47e-01 | 97.3% | 98.6% |
| 2324015 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.52 | 44.0 | 3.52e-01 | 94.7% | 79.0% |
| 3587296 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 42.0 | 3.63e-01 | 93.3% | 84.6% |
| 3914972 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.52 | 45.0 | 3.46e-01 | 100.0% | 71.9% |
| 3184173 | 1137.1.1.1 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase | 0.52 | 43.0 | 3.45e-01 | 94.7% | 64.4% |
| 3492071 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.51 | 44.0 | 3.73e-01 | 96.0% | 98.4% |
| 4602833 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.50 | 35.0 | 2.96e-01 | 73.3% | 71.9% |