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rifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00239
Bact-Virrifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00239
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-75
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2damA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.58 | 40.0 | 4.18e-01 | 97.3% | 80.6% |
| 3pvlA03 | 1.20.80.10 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.55 | 43.0 | 3.75e-01 | 88.0% | 54.2% |
| 6p73A02 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.53 | 37.0 | 3.02e-01 | 73.3% | 65.7% |
| 2qe9B01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.52 | 40.0 | 3.15e-01 | 88.0% | 39.2% |
| 2vf8B02 | 1.20.1580.10 | Mainly Alpha › Up-down Bundle › ABC transporter ATPase like fold › ABC transporter ATPase like domain | 0.51 | 40.0 | 3.23e-01 | 88.0% | 73.0% |
| 3ocpB00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 43.0 | 3.64e-01 | 96.0% | 69.5% |
| 4kjmA02 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.51 | 34.0 | 3.76e-01 | 90.7% | 98.2% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4946919 | 4271.1.1.0 ↗ | alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like | 0.65 | 47.0 | 3.45e-01 | 77.3% | 61.9% |
| 3731279 | 5051.1.1.10 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 | 0.60 | 52.0 | 3.19e-01 | 98.7% | 67.1% |
| 3399869 | 219.1.1.24 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Herpes_teg_N | 0.58 | 47.0 | 3.53e-01 | 90.7% | 96.0% |
| 4018714 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.56 | 42.0 | 4.24e-01 | 89.3% | 82.7% |
| 3235950 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 37.0 | 3.45e-01 | 74.7% | 56.7% |
| 4887928 | 5063.1.1.1 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › PSI_PSAK | 0.55 | 40.0 | 4.14e-01 | 80.0% | 90.0% |
| 3783116 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 35.0 | 3.49e-01 | 72.0% | 62.5% |
| 5044998 | 2006.1.4.25 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_I | 0.53 | 36.0 | 2.71e-01 | 70.7% | 68.8% |
| 4952465 | 101.1.1.107 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF134 | 0.53 | 38.0 | 3.21e-01 | 78.7% | 46.7% |
| 3251965 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.53 | 43.0 | 3.07e-01 | 92.0% | 73.8% |
| 3761179 | 150.1.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Ferritin | 0.53 | 39.0 | 3.11e-01 | 80.0% | 59.4% |
| 4110524 | 4979.2.1.1 ↗ | alpha arrays › C-terminal domain of Hypothetical protein MPN330-like › XRN2-binding domain (XTBD) › XRN2-binding domain (XTBD) › XTBD | 0.52 | 40.0 | 3.76e-01 | 84.0% | 75.8% |
| 4823831 | 6004.1.1.2 ↗ | extended segments › FATC domain › FATC domain › FATC domain › ETC_C1_NDUFA5 | 0.51 | 38.0 | 3.49e-01 | 84.0% | 70.4% |
D2
medium
residues 76-178
Domain cluster:
rep: MW452941.1__QRV71437.1__MEP301_gp09__00009__D78-159
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4f0qD01 | 2.30.280.20 | Mainly Beta › Roll › PUA domain-like › | 0.63 | 55.0 | 4.21e-01 | 100.0% | 67.5% |
| 1b96A00 | 3.40.600.10 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › DNA mismatch repair MutH/Restriction endonuclease, type II | 0.62 | 53.0 | 4.10e-01 | 95.1% | 64.8% |
| 2odhA01 | 3.40.210.20 | Alpha Beta › 3-Layer(aba) Sandwich › PvuII Endonuclease; Chain A › MvaI/BcnI restriction endonuclease, catalytic domain | 0.60 | 43.0 | 4.04e-01 | 97.1% | 61.0% |
| 2pwyA01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.55 | 27.0 | 3.43e-01 | 81.6% | 80.7% |
| 3mb5A01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.55 | 26.0 | 3.14e-01 | 81.6% | 67.7% |
| 3g7kA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.53 | 41.0 | 3.43e-01 | 100.0% | 46.6% |
| 3fn5B00 | 2.40.260.10 | Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase | 0.50 | 38.0 | 3.31e-01 | 81.6% | 74.2% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5027628 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.74 | 68.0 | 5.44e-01 | 100.0% | 59.0% |
| 3936464 | 10.10.1.0 ↗ | beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) | 0.62 | 38.0 | 3.76e-01 | 70.9% | 56.4% |
| 3805401 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.55 | 47.0 | 3.62e-01 | 96.1% | 73.1% |
| 3685784 | 511.1.1.0 ↗ | beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain | 0.54 | 42.0 | 3.67e-01 | 86.4% | 93.5% |
| 3454981 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.52 | 39.0 | 4.28e-01 | 79.6% | 100.0% |