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rifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00341
Bact-Virrifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00341
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 43-123
Domain cluster:
rep: MK448710.1__QBX16110.1__Javan233_0030__00030__D34-99
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09643.16 best | YopX | 38.0 | 2.20e-09 | 100.0% | 57.0% |
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ox7A02 | 2.30.30.290 | Mainly Beta › Roll › SH3 type barrels. › YopX-like domains | 0.75 | 59.0 | 6.34e-01 | 90.1% | 95.7% |
| 5yh4A00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.71 | 56.0 | 4.36e-01 | 86.4% | 97.2% |
| 2p1gA02 | 2.30.260.10 | Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain | 0.62 | 52.0 | 4.83e-01 | 90.1% | 98.0% |
| 1zq1A01 | 2.30.30.520 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 49.0 | 5.02e-01 | 92.6% | 92.2% |
| 7xpkA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.61 | 54.0 | 4.49e-01 | 100.0% | 80.7% |
| 3tk9A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.59 | 35.0 | 3.22e-01 | 85.2% | 43.9% |
| 2eqkA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 43.0 | 4.48e-01 | 92.6% | 84.9% |
| 3k2zA02 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.58 | 42.0 | 3.71e-01 | 91.4% | 51.3% |
| 4p5nA00 | 2.30.30.1060 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 47.0 | 4.97e-01 | 88.9% | 97.3% |
| 3h8zA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 36.0 | 4.02e-01 | 77.8% | 81.2% |
| 2xrcC04 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.57 | 39.0 | 3.03e-01 | 70.4% | 45.5% |
| 1vwxY00 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 46.0 | 3.94e-01 | 91.4% | 63.4% |
| 2ckkA02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 38.0 | 4.35e-01 | 76.5% | 100.0% |
| 1mhnA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 38.0 | 4.29e-01 | 85.2% | 96.6% |
| 2k57A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 36.0 | 4.24e-01 | 74.1% | 98.2% |
| 3ef2A02 | 3.30.460.70 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.55 | 45.0 | 3.81e-01 | 90.1% | 93.5% |
| 3ml4C01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 40.0 | 3.73e-01 | 79.0% | 88.0% |
| 1iwmA00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.55 | 40.0 | 3.20e-01 | 79.0% | 85.3% |
| 2bonA02 | 2.60.200.40 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.55 | 44.0 | 3.76e-01 | 93.8% | 91.9% |
| 2kigA00 | 2.30.29.110 | Mainly Beta › Roll › PH-domain like › | 0.55 | 40.0 | 3.29e-01 | 79.0% | 62.1% |
| 3askA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 39.0 | 4.34e-01 | 92.6% | 100.0% |
| 2dhkA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 40.0 | 3.81e-01 | 80.2% | 82.0% |
| 2diqA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 42.0 | 3.94e-01 | 95.1% | 67.0% |
| 6heiA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.54 | 42.0 | 2.86e-01 | 87.7% | 39.9% |
| 3mp6A05 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 38.0 | 4.16e-01 | 91.4% | 96.8% |
| 1ckmA01 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.53 | 38.0 | 3.14e-01 | 76.5% | 85.8% |
| 1upqA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 39.0 | 3.64e-01 | 80.2% | 79.4% |
| 3ntkA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 38.0 | 3.85e-01 | 95.1% | 77.5% |
| 2rrfA00 | 2.30.29.160 | Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal | 0.52 | 39.0 | 3.36e-01 | 82.7% | 67.4% |
| 2v43A01 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.52 | 43.0 | 3.35e-01 | 91.4% | 85.8% |
| 3op1A02 | 2.40.30.30 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like | 0.52 | 44.0 | 4.06e-01 | 97.5% | 98.2% |
| 2gfuA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 44.0 | 3.79e-01 | 97.5% | 70.9% |
| 2w5eA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.52 | 32.0 | 3.29e-01 | 81.5% | 64.9% |
| 7nz1G01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.52 | 37.0 | 3.54e-01 | 85.2% | 63.5% |
| 7w3rB01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.51 | 40.0 | 2.79e-01 | 88.9% | 51.1% |
| 2ra2B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 35.0 | 3.98e-01 | 80.2% | 100.0% |
| 2gfoA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.51 | 40.0 | 2.69e-01 | 87.7% | 42.2% |
| 4b9wA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 33.0 | 3.86e-01 | 84.0% | 98.2% |
| 2k2jA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 36.0 | 3.29e-01 | 76.5% | 80.3% |
| 2eo6A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.50 | 37.0 | 3.43e-01 | 80.2% | 100.0% |
| 6tdyD01 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.50 | 40.0 | 4.13e-01 | 85.2% | 100.0% |
| 2ol5A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.50 | 36.0 | 2.81e-01 | 75.3% | 76.0% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3332390 | 6.1.1.2 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Kunitz_legume | 0.70 | 56.0 | 4.29e-01 | 87.7% | 92.2% |
| 3357075 | 6.1.1.2 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Kunitz_legume | 0.70 | 56.0 | 4.41e-01 | 87.7% | 97.7% |
| 2582511 | 6.1.1.2 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Kunitz_legume | 0.66 | 58.0 | 4.39e-01 | 96.3% | 92.1% |
| 3791851 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.63 | 46.0 | 3.85e-01 | 77.8% | 77.2% |
| 3482202 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.63 | 42.0 | 4.86e-01 | 90.1% | 100.0% |
| 3239355 | 220.1.1.46 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_14 | 0.62 | 44.0 | 3.84e-01 | 75.3% | 80.8% |
| 4025949 | 220.1.1.92 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Mcp5_PH | 0.61 | 45.0 | 3.96e-01 | 79.0% | 79.2% |
| 3502086 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 35.0 | 4.06e-01 | 79.0% | 85.5% |
| 4079197 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 42.0 | 4.19e-01 | 87.7% | 71.8% |
| 3508683 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.58 | 47.0 | 4.03e-01 | 88.9% | 88.5% |
| 3301015 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 44.0 | 4.77e-01 | 88.9% | 100.0% |
| 3909439 | 220.1.1.40 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › OCRL_clath_bd | 0.58 | 43.0 | 3.83e-01 | 79.0% | 84.3% |
| 3508319 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 39.0 | 4.31e-01 | 79.0% | 89.2% |
| 3272546 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.57 | 41.0 | 3.66e-01 | 76.5% | 76.0% |
| 3057477 | 220.1.1.146 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_NDK7_N | 0.57 | 42.0 | 4.09e-01 | 79.0% | 82.4% |
| 3507601 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.57 | 42.0 | 3.88e-01 | 79.0% | 92.4% |
| 3368700 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 47.0 | 4.21e-01 | 90.1% | 83.6% |
| 3821671 | 376.1.1.63 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › C1_2 | 0.56 | 42.0 | 3.66e-01 | 80.2% | 56.8% |
| 4420173 | 4.1.1.43 ↗ | beta barrels › SH3 › SH3 › SH3 › SMN_Tudor | 0.56 | 41.0 | 4.23e-01 | 91.4% | 82.7% |
| 3924149 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 34.0 | 4.08e-01 | 75.3% | 100.0% |
| 4559992 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.56 | 47.0 | 4.35e-01 | 92.6% | 80.6% |
| 3519597 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.56 | 43.0 | 4.13e-01 | 97.5% | 71.6% |
| 3515495 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 42.0 | 4.00e-01 | 96.3% | 69.5% |
| 3407820 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.55 | 41.0 | 4.08e-01 | 96.3% | 76.5% |
| 3501699 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 41.0 | 4.17e-01 | 96.3% | 83.7% |
| 3777241 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 46.0 | 4.16e-01 | 93.8% | 82.7% |
| 3535298 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.54 | 42.0 | 4.13e-01 | 96.3% | 76.7% |
| 3908017 | 4.1.1.253 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4537 | 0.54 | 42.0 | 4.22e-01 | 82.7% | 87.5% |
| 3622389 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 37.0 | 4.05e-01 | 82.7% | 89.2% |
| 3484006 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 47.0 | 3.48e-01 | 100.0% | 58.8% |
| 3936474 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 43.0 | 4.13e-01 | 96.3% | 75.8% |
| 3387846 | 1.1.7.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase | 0.54 | 46.0 | 4.10e-01 | 97.5% | 95.8% |
| 3868320 | 4.1.1.65 ↗ | beta barrels › SH3 › SH3 › SH3 › 53-BP1_Tudor | 0.54 | 35.0 | 3.82e-01 | 93.8% | 83.1% |
| 3176049 | 4.1.1.51 ↗ | beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor | 0.54 | 39.0 | 4.17e-01 | 93.8% | 92.8% |
| 3404983 | 4.1.1.12 ↗ | beta barrels › SH3 › SH3 › SH3 › PWWP | 0.54 | 46.0 | 4.21e-01 | 96.3% | 92.7% |
| 3395948 | 4.1.1.43 ↗ | beta barrels › SH3 › SH3 › SH3 › SMN_Tudor | 0.54 | 35.0 | 4.10e-01 | 87.7% | 100.0% |
| 4948484 | 102.1.1.13 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DUF655 | 0.53 | 38.0 | 3.11e-01 | 76.5% | 46.3% |
| 153172 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.53 | 40.0 | 3.90e-01 | 95.1% | 73.3% |
| 4990333 | 3613.1.1.0 ↗ | beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain | 0.53 | 45.0 | 3.77e-01 | 93.8% | 92.1% |
| 4317931 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.52 | 37.0 | 3.72e-01 | 86.4% | 72.9% |
| 3793656 | 4.1.1.169 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4819 | 0.52 | 38.0 | 3.23e-01 | 82.7% | 44.1% |
| 3935130 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 34.0 | 3.88e-01 | 87.7% | 98.2% |
| 3333322 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.52 | 41.0 | 3.50e-01 | 86.4% | 53.3% |
| 3349135 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 43.0 | 4.15e-01 | 90.1% | 91.1% |
| 4931402 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.52 | 44.0 | 3.97e-01 | 92.6% | 87.3% |
| 3710893 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 39.0 | 3.41e-01 | 82.7% | 63.8% |
| 4795566 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.52 | 36.0 | 3.89e-01 | 77.8% | 91.0% |
| 3787756 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.51 | 36.0 | 3.00e-01 | 76.5% | 88.0% |
| 3812274 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 42.0 | 3.58e-01 | 90.1% | 60.0% |
| 3500684 | 4.1.1.71 ↗ | beta barrels › SH3 › SH3 › SH3 › Gemin7 | 0.51 | 40.0 | 4.09e-01 | 92.6% | 87.5% |
| 3833030 | 4.1.1.187 ↗ | beta barrels › SH3 › SH3 › SH3 › DIRP | 0.51 | 40.0 | 3.38e-01 | 85.2% | 80.0% |