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rifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00342

Bact-Vir

rifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00342

Identity

Kingdom:
phage

Quality

68.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-77
PDB
Domain cluster: representative
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mpcA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 58.0 4.87e-01 100.0% 66.7%
6rpxA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 58.0 5.01e-01 100.0% 76.5%
7zxkB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 55.0 4.98e-01 100.0% 83.5%
1sq2N00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 56.0 4.52e-01 100.0% 70.5%
1bquA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 56.0 4.54e-01 100.0% 66.7%
7u7nA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 56.0 4.71e-01 100.0% 77.3%
8bvoA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 56.0 4.80e-01 98.1% 77.9%
3s98A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 55.0 4.88e-01 100.0% 70.7%
3l5hA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 54.0 4.89e-01 100.0% 88.5%
3wcyA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 53.0 4.70e-01 100.0% 73.3%
8os3A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 54.0 4.64e-01 100.0% 76.1%
2yuxA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 54.0 4.39e-01 100.0% 63.0%
3lqmA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 52.0 4.40e-01 100.0% 72.5%
2yuwA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 53.0 4.47e-01 100.0% 72.4%
3s98A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 52.0 4.43e-01 100.0% 65.3%
4psrA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.63 49.0 3.88e-01 90.6% 75.4%
3lb6C01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 51.0 4.50e-01 100.0% 70.5%
4nn5C02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 51.0 4.31e-01 100.0% 63.6%
2ed8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 51.0 4.52e-01 100.0% 75.6%
1n26A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 51.0 4.25e-01 100.0% 69.2%
2jllA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 51.0 4.31e-01 100.0% 71.4%
4pt6A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 48.0 3.68e-01 100.0% 92.9%
2dn7A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 49.0 4.08e-01 100.0% 63.6%
2wanA05 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 49.0 4.30e-01 100.0% 89.8%
2dm4A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 48.0 4.17e-01 100.0% 71.3%
2hczX02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.59 47.0 4.03e-01 100.0% 63.5%
2xtsA02 2.60.40.650 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 50.0 3.86e-01 100.0% 61.5%
1acxA00 2.60.40.230 Mainly Beta › Sandwich › Immunoglobulin-like › Neocarzinostatin-like 0.58 48.0 3.96e-01 100.0% 83.3%
1whoA00 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.58 48.0 4.13e-01 100.0% 69.1%
3besR01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 48.0 4.29e-01 100.0% 77.1%
2orzA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 47.0 3.56e-01 100.0% 90.9%
5e53A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 47.0 4.09e-01 100.0% 77.4%
5y4mA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 46.0 3.54e-01 100.0% 92.7%
4dmiA02 2.60.120.1010 Mainly Beta › Sandwich › Jelly Rolls › 0.57 40.0 3.12e-01 77.4% 78.8%
1c7sA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 44.0 4.23e-01 100.0% 75.8%
4oq1A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 41.0 3.49e-01 83.0% 64.4%
1npsA00 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.56 46.0 4.05e-01 100.0% 92.0%
6etzA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 48.0 4.19e-01 100.0% 76.2%
3ffjA04 2.60.40.4040 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 46.0 3.66e-01 100.0% 55.1%
5e50A01 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.56 43.0 3.73e-01 100.0% 51.0%
3hqxA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 46.0 3.84e-01 100.0% 72.4%
1vj2A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 46.0 3.73e-01 100.0% 66.7%
2e6jA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 47.0 3.80e-01 100.0% 75.9%
1m4kA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 43.0 3.79e-01 100.0% 72.4%
5g47A01 2.60.40.3770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 47.0 4.11e-01 100.0% 83.1%
4amwA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 42.0 4.02e-01 96.2% 81.7%
2qqkA02 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.54 44.0 3.57e-01 96.2% 88.7%
2bnmA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 42.0 3.46e-01 98.1% 85.8%
2v72A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 41.0 3.29e-01 100.0% 97.1%
2xhkB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 44.0 3.50e-01 100.0% 54.5%
2wnoA01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.52 42.0 3.43e-01 96.2% 96.5%
2irmA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.52 42.0 2.70e-01 100.0% 34.5%
3zt9A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.52 42.0 3.03e-01 100.0% 33.3%
1a0iA01 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.51 43.0 3.76e-01 98.1% 67.5%
2ic2A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.38e-01 100.0% 74.0%
4yrdA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 39.0 3.20e-01 94.3% 89.1%
1uf2C02 2.60.120.170 Mainly Beta › Sandwich › Jelly Rolls › 0.50 40.0 2.96e-01 92.5% 66.2%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3536026 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.71 60.0 4.81e-01 100.0% 60.0%
5068640 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.69 61.0 4.96e-01 100.0% 68.0%
140204 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.68 58.0 4.90e-01 100.0% 68.1%
4969174 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 57.0 4.43e-01 100.0% 71.5%
3940366 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.67 57.0 4.11e-01 100.0% 41.2%
3269943 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.65 54.0 4.62e-01 100.0% 89.5%
4110334 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 55.0 4.78e-01 100.0% 77.6%
3552388 11.1.1.334 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TSLPR_D1 0.64 53.0 4.54e-01 100.0% 72.6%
3907835 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 53.0 4.43e-01 100.0% 66.0%
5030014 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 53.0 4.05e-01 100.0% 55.6%
4596902 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 51.0 4.43e-01 100.0% 72.6%
4021418 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 51.0 3.96e-01 100.0% 81.5%
4130337 11.1.1.335 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GlgB_N 0.62 50.0 4.16e-01 100.0% 57.3%
3896286 11.1.1.96 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.61 51.0 4.24e-01 100.0% 76.2%
3876448 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 52.0 3.93e-01 100.0% 60.7%
3945528 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 50.0 4.48e-01 100.0% 96.2%
3832908 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.59 44.0 3.28e-01 88.7% 77.1%
3102650 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.59 49.0 3.99e-01 100.0% 61.7%
3740399 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.59 48.0 4.51e-01 90.6% 92.3%
137710 11.1.1.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Expansin_C 0.58 48.0 4.07e-01 100.0% 66.0%
4874199 11.40.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-like domain in paramyxoviruses fusion protein › Immunoglobulin-like domain in paramyxoviruses fusion protein › Fusion_gly 0.58 46.0 2.78e-01 100.0% 11.3%
3507396 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 47.0 4.16e-01 100.0% 90.0%
5035549 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 47.0 4.09e-01 100.0% 72.6%
5055776 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 47.0 4.38e-01 98.1% 78.6%
3281400 72.1.1.0 ↗ beta sandwiches › gamma-Crystallin-like › gamma-Crystallin-like › gamma-Crystallin-like 0.57 47.0 4.43e-01 100.0% 98.6%
4966975 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 48.0 3.89e-01 100.0% 82.7%
3270361 73.1.1.9 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA_2 0.57 44.0 3.68e-01 100.0% 45.5%
5035551 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 47.0 4.46e-01 100.0% 87.7%
3461888 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 47.0 3.42e-01 100.0% 64.9%
4547628 210.2.1.2 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › SpoIIE 0.56 46.0 3.17e-01 100.0% 29.8%
3274338 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.55 43.0 3.60e-01 100.0% 44.3%
1569630 12.1.1.50 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_31_3rd 0.55 45.0 3.92e-01 100.0% 93.6%
1176686 10.32.1.77 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Reelin_subrepeat-B 0.55 41.0 3.16e-01 88.7% 85.1%
3972513 210.2.1.2 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › SpoIIE 0.54 45.0 3.12e-01 100.0% 68.2%
3252264 11.1.1.914 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29344 0.54 45.0 3.76e-01 100.0% 66.7%
4567075 10.12.1.84 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › VKGC_lumenal_dom 0.54 43.0 2.86e-01 98.1% 67.7%
3650799 11.2.1.37 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF6598 0.54 40.0 3.09e-01 84.9% 58.3%
3252189 11.1.1.914 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29344 0.54 43.0 3.70e-01 100.0% 73.0%
3519899 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.53 38.0 2.99e-01 81.1% 50.7%
3897532 10.32.1.2 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C 0.53 42.0 3.45e-01 100.0% 93.6%
3643370 10.13.1.0 ↗ beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A 0.53 43.0 3.21e-01 96.2% 45.8%
3171619 11.1.1.643 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig-like_POM152 0.53 42.0 3.73e-01 100.0% 86.7%
3423323 10.13.1.1 ↗ beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A › E1-E2_ATPase 0.52 42.0 3.34e-01 96.2% 56.8%
1566734 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.52 37.0 3.47e-01 83.0% 80.3%