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rifcsphigho2_12_scaffold_16_prodigal-single.1__X__X__00012
Bact-Virrifcsphigho2_12_scaffold_16_prodigal-single.1__X__X__00012
Identity
- Kingdom:
- phage
Quality
94.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 142-332
Domain cluster:
rep: IMGVR_UViG_3300005095_000540-3300005095-Ga0072504_10167229__D19-209
D2
medium
residues 1-39_81-135
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5ubvA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.67 | 43.0 | 4.91e-01 | 80.9% | 87.3% |
| 3whkA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.66 | 42.0 | 4.72e-01 | 79.8% | 84.7% |
| 4a3vB01 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.65 | 42.0 | 4.71e-01 | 77.7% | 86.1% |
| 2m7bA00 | 1.10.10.1920 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.60 | 40.0 | 4.33e-01 | 77.7% | 81.8% |
| 3uk6A02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.60 | 42.0 | 4.45e-01 | 87.2% | 81.9% |
| 2x8aA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.60 | 41.0 | 4.38e-01 | 78.7% | 82.5% |
| 1qrjA02 | 1.10.1200.30 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Retrovirus capsid C-terminal domain | 0.59 | 32.0 | 3.41e-01 | 75.5% | 56.5% |
| 1w5sA01 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.57 | 47.0 | 4.83e-01 | 86.2% | 100.0% |
| 1r6bX03 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.56 | 43.0 | 4.51e-01 | 94.7% | 88.6% |
| 7qaqA01 | 3.40.50.11710 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase | 0.55 | 41.0 | 3.12e-01 | 76.6% | 40.4% |
| 1ca1A01 | 1.10.575.10 | Mainly Alpha › Orthogonal Bundle › P1 Nuclease › P1 Nuclease | 0.55 | 45.0 | 3.40e-01 | 91.5% | 97.6% |
| 1fnnA01 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.55 | 46.0 | 4.48e-01 | 89.4% | 100.0% |
| 2qbyA01 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.55 | 46.0 | 4.48e-01 | 91.5% | 94.2% |
| 5dqqA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 39.0 | 3.44e-01 | 80.9% | 52.3% |
| 1v32A00 | 1.10.245.10 | Mainly Alpha › Orthogonal Bundle › MDM2 › SWIB/MDM2 domain | 0.54 | 38.0 | 3.70e-01 | 76.6% | 67.3% |
| 7lv8A01 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.51 | 35.0 | 3.69e-01 | 79.8% | 77.4% |
| 2l5aA00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.51 | 45.0 | 3.47e-01 | 100.0% | 97.8% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3981441 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.68 | 40.0 | 4.47e-01 | 98.9% | 74.7% |
| 4345957 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.66 | 42.0 | 4.64e-01 | 84.0% | 80.0% |
| 2842242 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.65 | 44.0 | 4.76e-01 | 92.6% | 82.3% |
| 5025839 | 148.1.3.50 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Cdc6_lid | 0.62 | 40.0 | 4.43e-01 | 80.9% | 81.3% |
| 4999188 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.61 | 43.0 | 4.65e-01 | 79.8% | 86.3% |
| 1175290 | 170.1.1.5 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › Gag_p24_C | 0.59 | 32.0 | 3.43e-01 | 75.5% | 57.1% |
| 3625613 | 148.1.3.46 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Cdc6-ORC-like_ATPase_lid | 0.56 | 49.0 | 4.81e-01 | 95.7% | 95.0% |
| 4985516 | 2004.1.1.1215 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cdc6_lid | 0.55 | 46.0 | 3.29e-01 | 89.4% | 99.3% |
| 5017582 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.54 | 45.0 | 4.58e-01 | 92.6% | 100.0% |
| 3169920 | 138.1.1.0 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain | 0.53 | 41.0 | 3.91e-01 | 84.0% | 99.1% |
| 5056788 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.52 | 43.0 | 4.22e-01 | 90.4% | 92.4% |
| 3397264 | 4193.1.1.0 ↗ | alpha arrays › RUN domain › RUN domain › RUN domain | 0.52 | 40.0 | 3.35e-01 | 84.0% | 89.4% |
| 3702979 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.50 | 43.0 | 2.88e-01 | 98.9% | 69.0% |
| 3616676 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.50 | 37.0 | 3.51e-01 | 90.4% | 66.4% |