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rifcsphigho2_12_scaffold_16_prodigal-single.1__X__X__00066
Bact-Virrifcsphigho2_12_scaffold_16_prodigal-single.1__X__X__00066
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 28-133
Domain cluster:
rep: IMGVR_UViG_3300020812_000284-3300020812-Ga0214071_15473997__D22-123
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF21781.3 best | DUF6876 | 66.2 | 3.70e-18 | 100.0% | 75.4% |
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2r41A00 | 3.10.450.150 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein | 0.73 | 60.0 | 6.14e-01 | 95.3% | 89.3% |
| 4g59C02 | 3.30.500.30 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.65 | 50.0 | 4.40e-01 | 82.1% | 88.6% |
| 2qv8A00 | 3.55.40.10 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › minor pseudopilin epsh domain | 0.65 | 48.0 | 4.33e-01 | 77.4% | 71.5% |
| 2ia1A01 | 3.30.500.20 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › BH3703-like domains | 0.63 | 50.0 | 4.85e-01 | 86.8% | 92.4% |
| 1lqvB00 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.60 | 46.0 | 3.94e-01 | 81.1% | 89.6% |
| 4m4zA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.59 | 26.0 | 3.80e-01 | 71.7% | 95.7% |
| 2o1uB01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.59 | 44.0 | 3.80e-01 | 79.2% | 100.0% |
| 3cjeA00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.58 | 41.0 | 3.71e-01 | 73.6% | 80.0% |
| 1zt4C01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.58 | 43.0 | 3.71e-01 | 80.2% | 83.8% |
| 6a97C01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.57 | 45.0 | 4.25e-01 | 84.9% | 93.1% |
| 5w7zA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.57 | 45.0 | 4.43e-01 | 84.9% | 93.8% |
| 2nykA01 | 3.30.500.30 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.57 | 44.0 | 3.95e-01 | 82.1% | 80.4% |
| 4dkmA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.56 | 49.0 | 3.97e-01 | 100.0% | 97.2% |
| 1h4uA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.56 | 49.0 | 3.82e-01 | 100.0% | 87.8% |
| 3it8D01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.55 | 43.0 | 3.73e-01 | 85.8% | 77.2% |
| 6melB01 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.55 | 46.0 | 4.04e-01 | 89.6% | 79.4% |
| 1uisA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.54 | 47.0 | 3.82e-01 | 100.0% | 92.9% |
| 2qyfB00 | 3.30.900.20 | Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › | 0.54 | 38.0 | 3.23e-01 | 74.5% | 92.0% |
| 1aj6A00 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.54 | 41.0 | 3.43e-01 | 82.1% | 89.2% |
| 1jllB01 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.53 | 45.0 | 3.93e-01 | 90.6% | 78.7% |
| 1wr2A01 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.53 | 45.0 | 3.92e-01 | 90.6% | 82.2% |
| 1pvgA01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.53 | 46.0 | 3.57e-01 | 97.2% | 92.2% |
| 3ijfX00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.51 | 37.0 | 3.56e-01 | 85.8% | 65.0% |
| 1z2nX02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.50 | 39.0 | 3.90e-01 | 90.6% | 82.6% |
| 4ebgA00 | 3.10.450.560 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 35.0 | 3.64e-01 | 72.6% | 96.9% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2994234 | 4090.1.1.1 ↗ | a+b two layers › BH3703-like › BH3703-like › BH3703-like › YezG-like | 0.64 | 50.0 | 4.40e-01 | 84.0% | 67.7% |
| 4195041 | 4090.1.1.1 ↗ | a+b two layers › BH3703-like › BH3703-like › BH3703-like › YezG-like | 0.64 | 50.0 | 4.46e-01 | 84.0% | 70.0% |
| 3477854 | 3680.1.1.1 ↗ | a+b complex topology › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain › SARA_C | 0.63 | 55.0 | 5.25e-01 | 96.2% | 93.6% |
| 3252048 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.60 | 45.0 | 4.12e-01 | 82.1% | 60.7% |
| 3598260 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.59 | 49.0 | 4.66e-01 | 89.6% | 86.4% |
| 3255595 | 225.1.1.7 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_3 | 0.59 | 46.0 | 3.73e-01 | 84.0% | 93.3% |
| 3787700 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.59 | 47.0 | 4.17e-01 | 85.8% | 100.0% |
| 3576534 | 9.15.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 › TLD | 0.58 | 46.0 | 3.87e-01 | 84.9% | 100.0% |
| 3934036 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.58 | 44.0 | 4.27e-01 | 81.1% | 97.5% |
| 2337265 | 12.3.1.33 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › PcRGLX_2nd | 0.57 | 48.0 | 3.28e-01 | 90.6% | 67.5% |
| 4987320 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.56 | 26.0 | 3.38e-01 | 89.6% | 76.7% |
| 297731 | 271.1.1.1 ↗ | beta barrels › GFP-like › GFP-like › GFP-like › GFP | 0.55 | 48.0 | 3.90e-01 | 100.0% | 93.5% |
| 3998214 | 225.1.1.3 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c | 0.54 | 46.0 | 3.55e-01 | 96.2% | 88.2% |
| 3591681 | 243.6.1.4 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA | 0.53 | 32.0 | 3.21e-01 | 72.6% | 58.2% |
| 3390052 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.52 | 39.0 | 3.00e-01 | 79.2% | 82.8% |
| 3976533 | 3943.1.1.5 ↗ | beta sandwiches › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains › WZC_N | 0.51 | 43.0 | 4.48e-01 | 94.3% | 100.0% |