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rifcsphigho2_12_scaffold_16_prodigal-single.1__X__X__00119
Bact-Virrifcsphigho2_12_scaffold_16_prodigal-single.1__X__X__00119
Identity
- Kingdom:
- phage
Quality
82.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-70
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6qdws00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.60 | 41.0 | 3.42e-01 | 72.9% | 69.7% |
| 1mvfD00 | 2.10.260.10 | Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › | 0.57 | 37.0 | 4.17e-01 | 98.3% | 90.9% |
| 2qa4I01 | 3.30.1550.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain | 0.54 | 38.0 | 3.97e-01 | 98.3% | 81.8% |
| 3go5A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 36.0 | 3.29e-01 | 71.2% | 58.2% |
| 1ub4C00 | 2.10.260.10 | Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › | 0.52 | 36.0 | 3.35e-01 | 76.3% | 57.3% |
| 5oomJ01 | 3.30.1550.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain | 0.51 | 40.0 | 3.92e-01 | 100.0% | 81.8% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4947865 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.62 | 42.0 | 4.56e-01 | 100.0% | 84.0% |
| 5050800 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.62 | 40.0 | 4.18e-01 | 100.0% | 72.7% |
| 4932924 | 375.1.1.321 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MazE_antitoxin | 0.61 | 37.0 | 4.36e-01 | 71.2% | 92.5% |
| 3280820 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.61 | 41.0 | 4.22e-01 | 100.0% | 74.5% |
| 4609559 | 604.2.1.1 ↗ | alpha bundles › Spectrin repeat-like › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succ_DH_flav_C | 0.60 | 45.0 | 3.49e-01 | 79.7% | 86.2% |
| 4535331 | 1.1.3.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › PrlF_antitoxin | 0.60 | 40.0 | 3.73e-01 | 100.0% | 54.7% |
| 5010299 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.60 | 42.0 | 4.51e-01 | 100.0% | 86.0% |
| 5076644 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.59 | 39.0 | 3.91e-01 | 100.0% | 66.7% |
| 4314606 | 1.1.3.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › PrlF_antitoxin | 0.59 | 39.0 | 4.20e-01 | 100.0% | 82.0% |
| 5006532 | 604.2.1.1 ↗ | alpha bundles › Spectrin repeat-like › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succ_DH_flav_C | 0.59 | 45.0 | 3.67e-01 | 84.7% | 95.0% |
| 4967714 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.59 | 39.0 | 3.89e-01 | 100.0% | 66.7% |
| 5050197 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.59 | 39.0 | 3.60e-01 | 100.0% | 53.3% |
| 3587631 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.59 | 40.0 | 3.11e-01 | 71.2% | 92.1% |
| 4962305 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.58 | 39.0 | 4.21e-01 | 100.0% | 84.0% |
| 4998594 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.58 | 38.0 | 4.12e-01 | 100.0% | 88.9% |
| 5029523 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.58 | 39.0 | 4.31e-01 | 96.6% | 87.5% |
| 5030546 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.57 | 37.0 | 3.89e-01 | 100.0% | 72.7% |
| 5073296 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.57 | 40.0 | 4.24e-01 | 100.0% | 88.0% |
| 4992635 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.57 | 37.0 | 4.00e-01 | 98.3% | 81.6% |
| 3958367 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.56 | 32.0 | 3.37e-01 | 72.9% | 60.0% |
| 3590853 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.56 | 39.0 | 4.01e-01 | 100.0% | 78.2% |
| 4927110 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.56 | 37.0 | 4.14e-01 | 98.3% | 91.1% |
| 4947224 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.56 | 39.0 | 4.13e-01 | 100.0% | 86.0% |
| 5022449 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.56 | 38.0 | 2.68e-01 | 72.9% | 51.4% |
| 5062781 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.56 | 36.0 | 3.99e-01 | 98.3% | 88.9% |
| 4942905 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.56 | 38.0 | 4.09e-01 | 100.0% | 93.3% |
| 4037134 | 812.1.1.1 ↗ | a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain › MinE | 0.55 | 37.0 | 3.59e-01 | 71.2% | 74.3% |
| 4939022 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.55 | 38.0 | 4.02e-01 | 100.0% | 86.0% |
| 4944882 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.55 | 37.0 | 3.93e-01 | 100.0% | 84.0% |
| 4005331 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.54 | 38.0 | 4.03e-01 | 100.0% | 86.0% |
| 5031154 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.54 | 37.0 | 3.78e-01 | 100.0% | 71.7% |
| 5028056 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.54 | 37.0 | 3.75e-01 | 76.3% | 71.7% |
| 5031039 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.53 | 35.0 | 3.82e-01 | 100.0% | 88.9% |
| 5002351 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.53 | 42.0 | 2.69e-01 | 98.3% | 66.1% |
| 4966971 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.53 | 36.0 | 3.77e-01 | 100.0% | 78.2% |
| 5024735 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.53 | 36.0 | 3.82e-01 | 98.3% | 84.0% |
| 5067548 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.52 | 35.0 | 3.89e-01 | 98.3% | 93.3% |
| 5047447 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.52 | 32.0 | 2.66e-01 | 100.0% | 30.0% |
| 5069260 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.52 | 36.0 | 3.79e-01 | 100.0% | 86.0% |