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rifcsphigho2_12_scaffold_16_prodigal-single.1__X__X__00191
Bact-Virrifcsphigho2_12_scaffold_16_prodigal-single.1__X__X__00191
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-79
Domain cluster:
rep: rifcsphigho2_12_scaffold_16_prodigal-single.1__X__X__00151__D1-74
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1qbjC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 37.0 | 3.99e-01 | 91.9% | 63.6% |
| 4gx0A01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.60 | 49.0 | 4.40e-01 | 94.6% | 64.1% |
| 2ge3A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.60 | 46.0 | 3.54e-01 | 81.1% | 61.0% |
| 3dr6B00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.59 | 46.0 | 3.55e-01 | 85.1% | 61.5% |
| 5jtfB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.55 | 46.0 | 3.54e-01 | 91.9% | 95.4% |
| 7kpsB01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.55 | 48.0 | 3.63e-01 | 97.3% | 46.4% |
| 3r7wC02 | 3.30.450.190 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.55 | 39.0 | 3.57e-01 | 98.6% | 54.2% |
| 4p3fA00 | 1.10.3450.40 | Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › Signal recognition particle, SRP68 subunit, RNA-binding domain | 0.54 | 39.0 | 2.86e-01 | 77.0% | 49.2% |
| 2ndpA00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.54 | 45.0 | 4.10e-01 | 91.9% | 80.8% |
| 4kmaA02 | 3.30.1360.230 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Sufu, C-terminal domain | 0.53 | 42.0 | 3.66e-01 | 89.2% | 79.8% |
| 6pzjA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 44.0 | 3.59e-01 | 100.0% | 85.8% |
| 6mvtA03 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.51 | 43.0 | 3.07e-01 | 100.0% | 50.6% |
| 4ii2A04 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 41.0 | 2.93e-01 | 89.2% | 96.9% |
| 2cnqA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.50 | 43.0 | 3.50e-01 | 95.9% | 69.2% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4619533 | 2003.6.1.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › HK | 0.68 | 48.0 | 3.27e-01 | 75.7% | 73.0% |
| 4335872 | 213.1.1.25 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 | 0.64 | 46.0 | 3.41e-01 | 77.0% | 43.0% |
| 3942370 | 213.1.1.26 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_4 | 0.60 | 49.0 | 3.75e-01 | 87.8% | 61.2% |
| 3963978 | 234.3.1.0 ↗ | a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain | 0.59 | 53.0 | 4.88e-01 | 100.0% | 83.2% |
| 3988282 | 213.1.1.25 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 | 0.59 | 48.0 | 3.58e-01 | 97.3% | 35.5% |
| 3188885 | 323.1.1.1 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › 2-oxoacid_dh | 0.58 | 52.0 | 3.56e-01 | 98.6% | 86.3% |
| 3927766 | 223.2.1.3 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s | 0.57 | 42.0 | 3.49e-01 | 98.6% | 41.4% |
| 4946274 | 152.1.1.0 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RPB6 | 0.55 | 43.0 | 4.21e-01 | 97.3% | 80.0% |
| 4054515 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.54 | 37.0 | 2.62e-01 | 71.6% | 27.7% |
| 4048893 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.54 | 39.0 | 4.01e-01 | 85.1% | 82.9% |
| 4289808 | 101.17.1.0 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins | 0.53 | 41.0 | 4.23e-01 | 87.8% | 91.4% |
| 4604068 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.53 | 44.0 | 4.38e-01 | 93.2% | 93.3% |
| 4965445 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.53 | 40.0 | 3.07e-01 | 81.1% | 56.4% |
| 3616382 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.52 | 39.0 | 4.23e-01 | 100.0% | 96.7% |
| 386335 | 283.2.1.2 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Phage_sheath_1C | 0.52 | 42.0 | 3.68e-01 | 94.6% | 57.9% |
| 3291780 | 148.1.3.207 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF7751 | 0.52 | 38.0 | 3.45e-01 | 93.2% | 58.0% |
| 4994522 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.51 | 37.0 | 2.93e-01 | 77.0% | 48.8% |
| 1684353 | 102.1.3.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain | 0.51 | 45.0 | 3.95e-01 | 100.0% | 86.8% |
| 3741509 | 2004.1.1.65 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › 6PF2K | 0.51 | 37.0 | 2.79e-01 | 93.2% | 29.0% |
| 5051347 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.51 | 38.0 | 3.79e-01 | 100.0% | 80.0% |
| 5066585 | 881.2.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › TM1622-like › TM1622-like | 0.50 | 34.0 | 2.84e-01 | 78.4% | 40.0% |