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rifcsphigho2_12_scaffold_16_prodigal-single.1__X__X__00259
Bact-Virrifcsphigho2_12_scaffold_16_prodigal-single.1__X__X__00259
Identity
- Kingdom:
- phage
Quality
83.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-91
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2yhoE00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.63 | 34.0 | 3.78e-01 | 97.8% | 67.1% |
| 3wknF00 | 6.20.50.120 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.51 | 24.0 | 3.06e-01 | 75.3% | 78.3% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5031239 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.85 | 45.0 | 5.43e-01 | 94.4% | 78.3% |
| 4934110 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.73 | 45.0 | 5.02e-01 | 100.0% | 78.6% |
| 3744731 | 376.1.1.11 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › COPI_C | 0.67 | 28.0 | 3.48e-01 | 78.7% | 61.8% |
| 4946420 | 376.1.1.180 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ResIII | 0.67 | 38.0 | 4.44e-01 | 96.6% | 78.5% |
| 5057111 | 2.1.1.42 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C | 0.60 | 41.0 | 3.47e-01 | 100.0% | 42.8% |
| 5076810 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.58 | 31.0 | 3.68e-01 | 92.1% | 74.6% |
| 4055966 | 375.1.1.9 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-C4_Topoisom | 0.58 | 31.0 | 3.86e-01 | 73.0% | 90.0% |
| 3236023 | 376.1.1.27 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 | 0.57 | 35.0 | 3.62e-01 | 87.6% | 64.7% |
| 3223486 | 376.1.1.27 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 | 0.56 | 34.0 | 3.81e-01 | 100.0% | 77.1% |
| 3225801 | 376.1.1.27 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 | 0.56 | 34.0 | 2.88e-01 | 87.6% | 36.0% |
| 3228846 | 376.1.1.27 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 | 0.55 | 34.0 | 3.77e-01 | 87.6% | 78.6% |
| 3383391 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.55 | 41.0 | 4.19e-01 | 97.8% | 79.5% |
| 3244152 | 376.1.1.27 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 | 0.53 | 34.0 | 3.55e-01 | 84.3% | 71.2% |
| 4887384 | 375.1.1.38 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Topo_Zn_Ribbon | 0.52 | 28.0 | 3.16e-01 | 73.0% | 68.8% |
| 3221216 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.52 | 34.0 | 3.33e-01 | 88.8% | 60.0% |