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rifcsphigho2_12_scaffold_16_prodigal-single.1__X__X__00285
Bact-Virrifcsphigho2_12_scaffold_16_prodigal-single.1__X__X__00285
Identity
- Kingdom:
- phage
Quality
70.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-71
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3g3oA00 | 3.20.100.30 | Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › VTC, catalytic tunnel domain | 0.84 | 63.0 | 3.96e-01 | 82.0% | 17.1% |
| 6xxvC00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.79 | 72.0 | 5.83e-01 | 100.0% | 79.3% |
| 2yfaA02 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.79 | 63.0 | 5.07e-01 | 86.9% | 45.7% |
| 1xl3C00 | 1.20.1280.80 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.78 | 65.0 | 5.72e-01 | 96.7% | 62.6% |
| 2dw4A03 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.75 | 62.0 | 5.28e-01 | 100.0% | 55.4% |
| 1lj2A00 | 1.20.5.970 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Nonstructural RNA-binding protein | 0.75 | 60.0 | 5.00e-01 | 90.2% | 50.9% |
| 3vm9A02 | 6.10.140.2110 | Special › Helix non-globular › Helix Hairpins › | 0.74 | 60.0 | 6.20e-01 | 88.5% | 96.5% |
| 3ehfD01 | 1.20.5.1930 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.74 | 61.0 | 6.07e-01 | 91.8% | 95.2% |
| 2fcwA00 | 1.20.81.10 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain | 0.72 | 65.0 | 5.39e-01 | 100.0% | 73.6% |
| 3hr0B01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.72 | 59.0 | 5.56e-01 | 100.0% | 74.7% |
| 1zhcA00 | 6.10.280.50 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.71 | 60.0 | 5.58e-01 | 93.4% | 86.8% |
| 2l35A00 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.71 | 56.0 | 5.59e-01 | 100.0% | 84.1% |
| 3lssA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.71 | 62.0 | 5.11e-01 | 100.0% | 58.0% |
| 1vf7A03 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.70 | 56.0 | 5.72e-01 | 98.4% | 88.3% |
| 1ucuA01 | 6.10.280.190 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 59.0 | 5.74e-01 | 100.0% | 86.8% |
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.70 | 61.0 | 5.77e-01 | 100.0% | 81.3% |
| 1yg2A02 | 6.10.140.190 | Special › Helix non-globular › Helix Hairpins › | 0.70 | 58.0 | 5.11e-01 | 100.0% | 62.2% |
| 2qqyA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.69 | 61.0 | 4.72e-01 | 100.0% | 76.1% |
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.67 | 55.0 | 5.59e-01 | 91.8% | 95.1% |
| 4hr1A00 | 1.20.1270.410 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.67 | 58.0 | 4.72e-01 | 98.4% | 61.9% |
| 3layF00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.67 | 58.0 | 5.43e-01 | 100.0% | 88.5% |
| 1a52A00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.67 | 58.0 | 3.92e-01 | 100.0% | 74.5% |
| 3rq9A00 | 1.10.287.2500 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.67 | 55.0 | 5.19e-01 | 98.4% | 75.6% |
| 2e87A01 | 1.20.120.1190 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.66 | 55.0 | 4.18e-01 | 96.7% | 48.1% |
| 2kw6A00 | 6.10.140.1300 | Special › Helix non-globular › Helix Hairpins › | 0.66 | 55.0 | 5.42e-01 | 96.7% | 84.6% |
| 5k3hB04 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.65 | 57.0 | 4.46e-01 | 100.0% | 51.9% |
| 2yevC00 | 6.10.280.110 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 54.0 | 5.39e-01 | 100.0% | 98.4% |
| 7ymiZ01 | 1.10.287.740 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre | 0.64 | 50.0 | 5.18e-01 | 91.8% | 93.1% |
| 1l5jA03 | 3.40.1060.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aconitase; Domain 2 › Aconitase, Domain 2 | 0.64 | 52.0 | 3.76e-01 | 90.2% | 45.1% |
| 3jcuZ00 | 1.10.287.740 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre | 0.64 | 52.0 | 5.29e-01 | 98.4% | 95.1% |
| 1s5jA04 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.63 | 51.0 | 5.14e-01 | 95.1% | 95.1% |
| 2q0oC00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.62 | 50.0 | 4.63e-01 | 100.0% | 69.8% |
| 3tklB01 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 50.0 | 5.01e-01 | 91.8% | 91.9% |
| 1br0A00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 51.0 | 4.19e-01 | 100.0% | 60.0% |
| 2wmmA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.58 | 42.0 | 4.48e-01 | 85.2% | 100.0% |
| 4l8jA04 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.57 | 46.0 | 4.67e-01 | 93.4% | 93.2% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3463858 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.85 | 70.0 | 5.89e-01 | 91.8% | 55.0% |
| 4463205 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.84 | 76.0 | 4.42e-01 | 100.0% | 12.5% |
| 3513381 | 4082.1.1.0 ↗ | alpha duplicates or obligate multimers › Hairy Orange domain › Hairy Orange domain › Hairy Orange domain | 0.81 | 54.0 | 5.49e-01 | 98.4% | 70.0% |
| 3764064 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.80 | 62.0 | 5.60e-01 | 88.5% | 61.2% |
| 3700089 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.78 | 67.0 | 6.55e-01 | 100.0% | 87.7% |
| 4077176 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.77 | 58.0 | 5.04e-01 | 80.3% | 57.8% |
| 4970333 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.76 | 65.0 | 5.63e-01 | 95.1% | 65.3% |
| 3488077 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.75 | 65.0 | 5.59e-01 | 100.0% | 62.1% |
| 3331809 | 375.1.9.23 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase › Sterile | 0.74 | 62.0 | 4.43e-01 | 93.4% | 33.7% |
| 5078867 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.72 | 57.0 | 5.06e-01 | 88.5% | 66.7% |
| 3882597 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.71 | 60.0 | 5.29e-01 | 96.7% | 64.4% |
| 3607086 | 4992.1.1.0 ↗ | extended segments › RelB-like › RelB-like › RelB-like | 0.70 | 61.0 | 5.60e-01 | 98.4% | 85.0% |
| 3938318 | 4992.1.1.0 ↗ | extended segments › RelB-like › RelB-like › RelB-like | 0.69 | 62.0 | 4.95e-01 | 100.0% | 50.8% |
| 3600361 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.69 | 61.0 | 5.24e-01 | 98.4% | 71.6% |
| 4933188 | 5069.1.3.1 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › Sdh_cyt | 0.69 | 59.0 | 5.09e-01 | 95.1% | 82.1% |
| 4110549 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.68 | 58.0 | 4.89e-01 | 100.0% | 56.4% |
| 4211233 | 4120.1.1.60 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › GlutR_dimer | 0.68 | 58.0 | 5.38e-01 | 98.4% | 83.7% |
| 4519766 | 633.6.1.2 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › ACOX | 0.67 | 58.0 | 4.03e-01 | 98.4% | 58.6% |
| 3257458 | 633.6.1.2 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › ACOX | 0.67 | 58.0 | 4.30e-01 | 100.0% | 76.8% |
| 4429194 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.67 | 59.0 | 4.86e-01 | 100.0% | 55.5% |
| 3621479 | 6026.1.1.1 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › cwf21 | 0.66 | 50.0 | 4.47e-01 | 82.0% | 57.6% |
| 2456957 | 192.13.1.1 ↗ | alpha bundles › Long alpha-hairpin › ISY1 N-terminal domain-like › ISY1 N-terminal domain-like › Isy1 | 0.66 | 54.0 | 5.56e-01 | 91.8% | 100.0% |
| 3643105 | 6026.1.1.1 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › cwf21 | 0.66 | 51.0 | 3.83e-01 | 83.6% | 35.5% |
| 4424778 | 605.2.1.3 ↗ | alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 › Seryl_tRNA_N | 0.66 | 57.0 | 4.78e-01 | 100.0% | 55.5% |
| 4042007 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.65 | 58.0 | 4.78e-01 | 100.0% | 55.5% |
| 3493417 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.64 | 57.0 | 4.20e-01 | 100.0% | 40.6% |
| 3491670 | 614.1.1.0 ↗ | alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain | 0.64 | 50.0 | 5.18e-01 | 90.2% | 100.0% |
| 3349592 | 375.10.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DNA_Pol | 0.62 | 49.0 | 3.99e-01 | 86.9% | 93.0% |
| 3176029 | 192.13.1.0 ↗ | alpha bundles › Long alpha-hairpin › ISY1 N-terminal domain-like › ISY1 N-terminal domain-like | 0.62 | 44.0 | 4.06e-01 | 91.8% | 57.5% |
| 2055367 | 650.1.1.3 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › HsbA | 0.62 | 49.0 | 4.82e-01 | 100.0% | 82.9% |
| 4497642 | 150.1.2.20 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › Rubrerythrin | 0.62 | 56.0 | 3.50e-01 | 100.0% | 52.8% |
| 3984062 | 603.1.1.217 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PqiA | 0.59 | 49.0 | 4.30e-01 | 100.0% | 70.0% |