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rifcsphigho2_12_scaffold_16_prodigal-single.1__X__X__00323

Bact-Vir

rifcsphigho2_12_scaffold_16_prodigal-single.1__X__X__00323

Identity

Kingdom:
phage

Quality

84.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 29-93
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.75 44.0 4.43e-01 100.0% 57.6%
5vmzA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.72 41.0 5.06e-01 100.0% 94.9%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.64 38.0 4.04e-01 100.0% 66.7%
3hlzA02 1.20.120.1090 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.62 50.0 4.05e-01 90.8% 89.9%
3rauA00 1.25.40.280 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains 0.58 49.0 3.16e-01 100.0% 44.4%
8d3mA02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.55 48.0 3.30e-01 100.0% 77.1%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 38.0 3.17e-01 72.3% 85.3%
3nqpA00 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 44.0 2.66e-01 92.3% 26.3%
2c7yA00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.53 46.0 2.87e-01 98.5% 40.9%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 36.0 3.08e-01 72.3% 95.3%
3dmcA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 37.0 3.08e-01 80.0% 39.6%
1httA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.51 44.0 3.92e-01 100.0% 94.9%
3d03A01 3.60.21.40 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › GpdQ, catalytic alpha/beta sandwich domain 0.51 42.0 3.39e-01 92.3% 69.5%
1zcdA00 1.20.1530.10 Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain 0.50 43.0 2.74e-01 100.0% 54.3%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3944008 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.94 88.0 8.80e-01 100.0% 98.5%
4025401 243.6.1.5 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › UPF0113_N 0.59 39.0 3.55e-01 83.1% 50.0%
3226126 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.58 46.0 3.91e-01 92.3% 96.7%
5011468 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.55 36.0 2.94e-01 72.3% 34.4%
4402956 3675.1.1.0 ↗ a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain 0.55 47.0 3.51e-01 96.9% 100.0%
5044742 375.1.1.95 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_13 0.55 34.0 3.48e-01 81.5% 64.6%
3684015 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.54 36.0 3.17e-01 72.3% 45.0%
60305 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.53 38.0 3.20e-01 73.8% 98.1%
1907246 101.1.2.212 ↗ alpha arrays › HTH › HTH › winged helix domain › Cac1_C 0.53 35.0 3.31e-01 89.2% 54.3%
4616279 375.1.1.95 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_13 0.53 34.0 3.48e-01 86.2% 66.2%
3743600 109.4.1.1297 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TIMELESS, PF27570 0.53 43.0 2.48e-01 93.8% 23.7%
4022416 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.52 38.0 3.02e-01 87.7% 37.0%
4017372 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.52 35.0 2.94e-01 70.8% 87.0%
3929449 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.52 39.0 2.72e-01 81.5% 79.0%
3828336 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.52 35.0 2.99e-01 72.3% 53.5%
2623930 4001.1.1.4 ↗ a+b duplicates or obligate multimers › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › Cullin_AB 0.51 39.0 3.44e-01 89.2% 93.7%
3699463 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.51 35.0 2.43e-01 70.8% 24.2%
4271212 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.51 35.0 2.90e-01 73.8% 87.8%
4316065 243.3.1.15 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Imm35 0.50 38.0 3.51e-01 95.4% 62.4%
3345924 101.1.2.245 ↗ alpha arrays › HTH › HTH › winged helix domain › PORR 0.50 38.0 2.71e-01 81.5% 89.7%
3550136 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.50 34.0 2.91e-01 72.3% 75.7%
3608772 2004.1.1.427 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RHSP, RHS_N 0.50 40.0 2.52e-01 92.3% 66.4%