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rifcsphigho2_12_scaffold_16_prodigal-single.1__X__X__00330
Bact-Virrifcsphigho2_12_scaffold_16_prodigal-single.1__X__X__00330
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 20-113
Domain cluster:
rep: OR195048.1__WNM72704.1__SEA_BOMBITAS_146__00146__D30-132
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7t2sA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.85 | 76.0 | 6.03e-01 | 100.0% | 50.9% |
| 3mwpB02 | 3.30.420.410 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Arenaviral nucleoprotein, C-terminal domain | 0.77 | 58.0 | 4.73e-01 | 100.0% | 43.4% |
| 7wrnA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.71 | 64.0 | 5.01e-01 | 100.0% | 50.0% |
| 1noyB02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.64 | 59.0 | 4.37e-01 | 100.0% | 68.1% |
| 3g2bA00 | 1.10.10.1150 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) | 0.56 | 27.0 | 2.80e-01 | 97.9% | 46.7% |
| 2w3pA02 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.55 | 46.0 | 3.45e-01 | 90.4% | 70.4% |
| 2czrA01 | 3.40.1350.70 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › TBP-interacting protein, N-terminal domain | 0.55 | 42.0 | 4.03e-01 | 90.4% | 71.7% |
| 1m4jA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.55 | 43.0 | 3.84e-01 | 84.0% | 83.5% |
| 1x67A01 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.50 | 40.0 | 3.59e-01 | 87.2% | 84.2% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2888739 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.85 | 76.0 | 6.00e-01 | 100.0% | 50.3% |
| 3612874 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.75 | 69.0 | 4.85e-01 | 100.0% | 63.9% |
| 4505558 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.72 | 66.0 | 5.05e-01 | 100.0% | 85.4% |
| 3555211 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.70 | 64.0 | 4.93e-01 | 100.0% | 85.4% |
| 3501741 | 4056.1.1.0 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein | 0.64 | 29.0 | 3.50e-01 | 81.9% | 63.3% |
| 4263806 | 4099.1.1.3 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spc24 | 0.63 | 34.0 | 4.06e-01 | 89.4% | 81.4% |
| 3391353 | 224.1.1.2 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin | 0.55 | 48.0 | 2.92e-01 | 95.7% | 95.0% |
| 3740496 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.54 | 43.0 | 3.94e-01 | 88.3% | 85.4% |
| 4145191 | 2003.1.5.53 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr | 0.53 | 47.0 | 3.13e-01 | 100.0% | 43.0% |
| 3550161 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.53 | 38.0 | 3.41e-01 | 76.6% | 95.7% |
| None | — | 0.52 | 46.0 | 3.09e-01 | 100.0% | 43.0% | |
| 4982731 | 2004.1.1.100 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NTPase_1 | 0.52 | 35.0 | 2.89e-01 | 71.3% | 98.9% |
| 2971233 | 4056.1.1.2 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_connector | 0.51 | 31.0 | 3.36e-01 | 95.7% | 75.0% |
| 4272491 | 2003.1.5.213 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS, tRNA_U5-meth_tr | 0.51 | 46.0 | 3.14e-01 | 100.0% | 42.0% |
| 5033076 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 24.0 | 2.99e-01 | 84.0% | 72.7% |
| 4673340 | 2003.1.5.174 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr, Methyltransf_15 | 0.51 | 46.0 | 3.08e-01 | 100.0% | 42.1% |
| None | — | 0.51 | 46.0 | 3.08e-01 | 100.0% | 42.1% | |
| 3535180 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 42.0 | 3.71e-01 | 96.8% | 61.5% |
| 5031046 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.51 | 41.0 | 4.03e-01 | 89.4% | 80.6% |
| None | — | 0.51 | 46.0 | 3.10e-01 | 100.0% | 43.5% | |
| 4495615 | 2003.1.5.196 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM5-TYW2_MTfase, tRNA_U5-meth_tr | 0.50 | 46.0 | 3.08e-01 | 100.0% | 42.0% |
D2
medium
residues 114-193
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8hi4A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.63 | 39.0 | 2.71e-01 | 88.7% | 19.4% |
| 1wxpA01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.62 | 35.0 | 3.47e-01 | 100.0% | 51.2% |
| 4heoA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.61 | 38.0 | 4.32e-01 | 100.0% | 89.1% |
| 2wl8C00 | 1.20.120.900 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pex19, mPTS binding domain | 0.60 | 44.0 | 3.97e-01 | 77.5% | 81.7% |
| 2hqmA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.55 | 48.0 | 3.50e-01 | 98.8% | 94.3% |
| 1br2A03 | 1.20.120.720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain | 0.55 | 40.0 | 3.81e-01 | 100.0% | 65.3% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4004395 | 3883.1.1.1 ↗ | alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf | 0.55 | 47.0 | 3.60e-01 | 98.8% | 51.7% |
| 5037107 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 33.0 | 3.34e-01 | 92.5% | 62.5% |