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rifcsphigho2_12_scaffold_16_prodigal-single.1__X__X__00342
Bact-Virrifcsphigho2_12_scaffold_16_prodigal-single.1__X__X__00342
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-203
Domain cluster:
rep: H1c1_full_scaffold_271_prodigal-single.1__X__X__00095__D8-178_280-310
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00579.32 best | tRNA-synt_1b | 87.2 | 1.70e-24 | 88.5% | 61.0% |
D2
high
residues 226-322
Domain cluster:
rep: tyrosyl-tRNA_synthetase__YP_003986615__Acanthamoeba_polyphaga_mimivirus__212035__D246-342
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2cyaA02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.96 | 86.0 | 7.81e-01 | 100.0% | 73.2% |
| 2j5bA02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.91 | 78.0 | 7.17e-01 | 100.0% | 71.9% |
| 2dlcX02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.91 | 86.0 | 7.71e-01 | 99.0% | 82.5% |
| 3p0jA03 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.90 | 77.0 | 7.81e-01 | 91.8% | 91.6% |
| 2el7A02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.85 | 61.0 | 6.22e-01 | 100.0% | 76.6% |
| 3p0hB01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.84 | 80.0 | 5.41e-01 | 100.0% | 34.9% |
| 3tzeA02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.81 | 67.0 | 6.46e-01 | 100.0% | 77.8% |
| 3hv0A02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.78 | 67.0 | 6.33e-01 | 100.0% | 77.7% |
| 3a04A02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.78 | 69.0 | 6.48e-01 | 100.0% | 78.4% |
| 3hzrA02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.77 | 68.0 | 6.44e-01 | 100.0% | 81.1% |
| 6ncrA02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.76 | 66.0 | 6.32e-01 | 100.0% | 82.4% |
| 1i6kA02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.76 | 62.0 | 5.94e-01 | 100.0% | 75.7% |
| 2yy5A02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.75 | 67.0 | 6.23e-01 | 100.0% | 78.2% |
| 5ekdA02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.70 | 58.0 | 5.50e-01 | 100.0% | 75.7% |
| 3nftA00 | 1.20.1710.10 | Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like | 0.56 | 45.0 | 3.29e-01 | 86.6% | 100.0% |
| 1vkzA02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.55 | 37.0 | 4.18e-01 | 84.5% | 97.1% |
| 3kalB05 | 3.30.1490.50 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Glutathione synthase lid domain | 0.53 | 31.0 | 3.66e-01 | 80.4% | 93.2% |
| 4f0fA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.51 | 42.0 | 3.47e-01 | 90.7% | 100.0% |
| 2cpxA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.50 | 35.0 | 3.78e-01 | 73.2% | 89.9% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4971292 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.97 | 94.0 | 7.34e-01 | 100.0% | 54.4% |
| 4979586 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.97 | 94.0 | 6.02e-01 | 100.0% | 26.8% |
| 5012077 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.96 | 93.0 | 6.01e-01 | 100.0% | 27.2% |
| 4061943 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.95 | 92.0 | 6.01e-01 | 100.0% | 29.7% |
| 4967192 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.95 | 92.0 | 6.06e-01 | 100.0% | 29.8% |
| 5048102 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.94 | 91.0 | 5.96e-01 | 100.0% | 29.4% |
| 3614377 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.93 | 88.0 | 5.77e-01 | 100.0% | 28.4% |
| 4023690 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.93 | 89.0 | 5.75e-01 | 100.0% | 26.4% |
| 3497647 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.92 | 88.0 | 5.50e-01 | 100.0% | 28.4% |
| 5079552 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.92 | 88.0 | 5.62e-01 | 100.0% | 25.2% |
| 3233553 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.92 | 87.0 | 5.64e-01 | 100.0% | 29.0% |
| 3997952 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.92 | 87.0 | 5.80e-01 | 100.0% | 29.8% |
| 4013546 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.91 | 87.0 | 5.69e-01 | 100.0% | 30.0% |
| 5001337 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.90 | 85.0 | 5.52e-01 | 100.0% | 26.8% |
| 3722941 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.90 | 85.0 | 5.58e-01 | 100.0% | 30.0% |
| 3465691 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.90 | 85.0 | 5.62e-01 | 100.0% | 28.5% |
| 4064994 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.87 | 76.0 | 5.03e-01 | 100.0% | 26.7% |
| 5058738 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.80 | 72.0 | 4.70e-01 | 100.0% | 26.0% |
| 5067873 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.79 | 71.0 | 4.58e-01 | 100.0% | 24.3% |
| 5082433 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.78 | 70.0 | 5.00e-01 | 100.0% | 36.4% |
| 5023951 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.78 | 72.0 | 4.66e-01 | 100.0% | 25.4% |
| 1260984 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.77 | 69.0 | 4.38e-01 | 100.0% | 22.2% |
| 5077374 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.77 | 69.0 | 4.47e-01 | 100.0% | 24.3% |
| 3933178 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.77 | 68.0 | 4.42e-01 | 100.0% | 23.9% |
| 3797510 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.77 | 68.0 | 4.40e-01 | 100.0% | 23.3% |
| 4015705 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.77 | 68.0 | 4.36e-01 | 100.0% | 22.5% |
| 135810 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.77 | 68.0 | 4.43e-01 | 100.0% | 24.3% |
| 4961918 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.76 | 68.0 | 4.36e-01 | 100.0% | 23.4% |
| 3890206 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.73 | 64.0 | 4.40e-01 | 100.0% | 30.3% |
| 3470130 | 219.1.1.81 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › MINDY-3_4_CD | 0.61 | 50.0 | 3.52e-01 | 89.7% | 61.9% |
| 3230448 | 243.1.1.82 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26529 | 0.57 | 48.0 | 4.13e-01 | 93.8% | 81.9% |
| 3800806 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 36.0 | 4.03e-01 | 97.9% | 90.0% |
| 3598375 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.51 | 40.0 | 2.90e-01 | 86.6% | 64.5% |