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rifcsphigho2_12_scaffold_16_prodigal-single.1__X__X__00365

Bact-Vir

rifcsphigho2_12_scaffold_16_prodigal-single.1__X__X__00365

Identity

Kingdom:
phage

Quality

85.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-123
PDB
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4nsmA00 6.10.250.2770 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.85 50.0 6.18e-01 74.8% 91.5%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.81 50.0 5.29e-01 81.1% 68.6%
2dq0A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.80 57.0 5.86e-01 81.1% 75.7%
1l8dA00 1.10.287.510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.78 54.0 5.59e-01 70.3% 97.1%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.78 60.0 6.21e-01 82.9% 84.0%
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.77 48.0 5.52e-01 74.8% 85.4%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.77 57.0 5.76e-01 75.7% 86.2%
5y06A01 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.76 65.0 5.03e-01 91.0% 45.4%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.75 53.0 5.91e-01 73.9% 90.9%
3u0cA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.75 65.0 5.77e-01 91.0% 90.7%
1uruA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.74 64.0 5.05e-01 91.0% 87.6%
2ficB00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.73 63.0 5.09e-01 91.0% 88.1%
7aalA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.73 65.0 4.81e-01 95.5% 84.2%
4wpcA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.72 61.0 4.49e-01 91.0% 56.9%
8a1gC01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.70 59.0 5.03e-01 91.9% 61.9%
1egdA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.70 49.0 4.50e-01 72.1% 95.7%
3x29A00 1.20.140.150 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.69 46.0 3.98e-01 71.2% 45.2%
2ix5A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.69 54.0 4.76e-01 82.0% 89.7%
1rx0A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.68 55.0 4.90e-01 85.6% 93.5%
3iqcA00 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.68 42.0 4.15e-01 79.3% 57.1%
1fxkC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.68 51.0 4.85e-01 80.2% 86.5%
6l3tA01 1.20.1440.80 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Gap junction channel protein cysteine-rich domain 0.67 49.0 4.00e-01 77.5% 42.2%
2ptqA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.67 56.0 4.09e-01 88.3% 52.2%
2wbiB03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.67 52.0 4.56e-01 81.1% 90.5%
2j0nB00 1.20.1710.10 Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like 0.66 53.0 4.48e-01 86.5% 90.4%
2jifA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.66 53.0 4.76e-01 85.6% 94.8%
3vbbE01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.66 48.0 4.73e-01 86.5% 70.6%
2jswA00 1.20.1410.10 Mainly Alpha › Up-down Bundle › I/LWEQ domain › I/LWEQ domain 0.65 53.0 4.41e-01 86.5% 73.0%
3owaA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.65 50.0 4.36e-01 82.0% 95.9%
1q5nA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.65 53.0 4.07e-01 87.4% 73.3%
2pg0A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.64 50.0 4.58e-01 84.7% 94.6%
3aonA00 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 49.0 4.14e-01 82.9% 77.1%
7dwqL01 1.20.1240.10 Mainly Alpha › Up-down Bundle › Photosystem 1 Reaction Centre Subunit Xi; Chain: L; › Photosystem I PsaL, reaction centre subunit XI 0.62 40.0 3.89e-01 74.8% 58.4%
1wdzA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.61 51.0 3.95e-01 88.3% 65.4%
2o6yA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.60 49.0 3.52e-01 88.3% 41.7%
2nyfA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.57 49.0 3.56e-01 94.6% 36.7%
1ykdB01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.56 41.0 3.44e-01 74.8% 97.9%
2kq9A00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.55 42.0 4.26e-01 81.1% 94.6%
3sghA00 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 36.0 2.36e-01 70.3% 24.0%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4019360 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.83 69.0 5.95e-01 91.0% 59.4%
3605252 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.81 71.0 6.06e-01 91.0% 69.7%
5022380 3755.3.1.632 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Prefoldin 0.81 57.0 5.22e-01 72.1% 82.1%
3481771 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.80 61.0 6.18e-01 78.4% 87.0%
4946568 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.79 63.0 3.75e-01 82.0% 33.6%
3614646 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.78 59.0 5.14e-01 77.5% 82.6%
3244401 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.76 61.0 6.01e-01 82.0% 86.1%
4023774 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.76 65.0 4.87e-01 90.1% 72.4%
3663497 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.76 63.0 5.53e-01 86.5% 81.9%
3402974 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.76 62.0 5.42e-01 87.4% 60.6%
3306310 192.29.1.115 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF599 0.76 62.0 5.49e-01 84.7% 80.7%
3675934 3755.3.1.374 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › UCP030365 0.76 61.0 5.33e-01 84.7% 75.6%
5082442 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.75 60.0 5.62e-01 86.5% 70.0%
3485296 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.75 59.0 6.08e-01 83.8% 85.7%
3931606 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.75 62.0 6.11e-01 86.5% 81.7%
5064040 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.75 57.0 4.51e-01 82.9% 42.4%
3594965 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.74 65.0 5.92e-01 91.0% 81.4%
3691694 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.74 63.0 5.97e-01 87.4% 80.8%
3768341 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.74 61.0 4.88e-01 86.5% 67.3%
3946983 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.74 48.0 5.58e-01 73.9% 92.5%
3634896 622.4.1.0 ↗ alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.74 58.0 5.72e-01 81.1% 82.6%
4140340 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.73 61.0 5.43e-01 87.4% 76.7%
4983091 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.72 60.0 5.58e-01 86.5% 83.7%
3690565 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.72 51.0 5.16e-01 74.8% 72.7%
3501387 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.72 60.0 4.30e-01 87.4% 36.2%
4057653 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.71 61.0 4.48e-01 91.0% 69.5%
3416428 633.6.1.8 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › ACOX_C_alpha1 0.71 53.0 4.46e-01 77.5% 58.3%
3262220 4177.1.1.1 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH 0.71 63.0 4.61e-01 94.6% 80.0%
3715891 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.71 55.0 4.70e-01 79.3% 63.0%
5045811 4323.1.1.0 ↗ alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C 0.71 58.0 4.99e-01 87.4% 57.6%
4236657 633.21.1.18 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CASP_dom 0.70 53.0 4.70e-01 78.4% 96.1%
3397986 3755.4.1.1 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › PI3K_P85_iSH2 0.70 59.0 5.01e-01 91.0% 68.3%
5053794 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.70 45.0 4.27e-01 70.3% 54.6%
3771989 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.70 56.0 5.23e-01 84.7% 68.9%
3336107 3562.1.1.11 ↗ alpha bundles › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › PGG 0.70 55.0 4.59e-01 82.9% 57.8%
3648942 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.70 55.0 4.87e-01 82.9% 60.6%
3287605 633.6.1.8 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › ACOX_C_alpha1 0.70 52.0 4.21e-01 77.5% 75.5%
4360632 3755.4.1.0 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.69 56.0 4.97e-01 83.8% 63.3%
4011414 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.69 52.0 4.09e-01 77.5% 40.5%
3784752 3748.1.1.3 ↗ extended segments › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › eIF3h_C 0.67 49.0 4.77e-01 87.4% 68.0%
5029669 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.67 49.0 4.79e-01 85.6% 70.0%
4015256 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.67 50.0 4.70e-01 81.1% 65.4%
5002054 4323.1.1.0 ↗ alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C 0.67 52.0 4.65e-01 81.1% 61.3%
5073251 602.1.1.1 ↗ alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like › Lyase_1 0.67 54.0 4.02e-01 86.5% 73.3%
3257456 633.6.1.8 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › ACOX_C_alpha1 0.66 55.0 4.67e-01 87.4% 89.1%
3219001 633.6.1.1 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA_dh_1 0.66 54.0 4.53e-01 85.6% 82.8%
3714775 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.66 56.0 3.49e-01 87.4% 46.4%
4883349 4952.1.1.1 ↗ alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › Lyase_1 0.66 51.0 3.88e-01 81.1% 74.4%
3595978 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.66 45.0 2.99e-01 74.8% 18.6%
5025554 602.1.1.1 ↗ alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like › Lyase_1 0.66 54.0 4.14e-01 87.4% 56.2%
3190486 633.6.1.1 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA_dh_1 0.66 53.0 3.75e-01 84.7% 42.9%
3716174 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.65 47.0 4.81e-01 75.7% 82.7%
5051087 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.65 49.0 5.00e-01 78.4% 86.4%
4983737 602.1.1.1 ↗ alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like › Lyase_1 0.65 53.0 3.85e-01 89.2% 61.9%
2329883 602.1.1.1 ↗ alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like › Lyase_1 0.64 52.0 4.02e-01 86.5% 80.1%
4960326 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.64 50.0 4.74e-01 82.0% 71.5%
3599181 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.62 46.0 3.47e-01 78.4% 71.8%
3526488 633.6.1.8 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › ACOX_C_alpha1 0.61 48.0 4.05e-01 83.8% 59.5%
3709607 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.61 49.0 4.22e-01 86.5% 65.1%
3631951 3755.3.1.355 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Uds1 0.60 48.0 4.47e-01 85.6% 68.6%
3735230 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.60 45.0 4.01e-01 78.4% 58.7%
None — 0.58 51.0 4.17e-01 95.5% 77.3%
3437776 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 45.0 2.99e-01 100.0% 48.1%