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rifcsphigho2_12_scaffold_16_prodigal-single.1__X__X__00437
Bact-Virrifcsphigho2_12_scaffold_16_prodigal-single.1__X__X__00437
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-84
Domain cluster:
rep: MZ422438.1__QXN67761.1__FPHOBKDP_00007__00007__D1-36_94-122
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1cttA02 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.82 | 68.0 | 6.00e-01 | 86.7% | 93.0% |
| 1r5tA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.80 | 71.0 | 5.81e-01 | 94.0% | 83.0% |
| 2w4lB00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.78 | 65.0 | 5.10e-01 | 86.7% | 58.0% |
| 1cttA01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.77 | 64.0 | 5.14e-01 | 88.0% | 53.0% |
| 6l08A01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.75 | 63.0 | 5.11e-01 | 90.4% | 69.5% |
| 3b8fB00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.73 | 61.0 | 5.09e-01 | 90.4% | 57.0% |
| 1g8mA03 | 3.40.140.20 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain | 0.67 | 58.0 | 4.84e-01 | 96.4% | 97.3% |
| 3hz6A01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.63 | 48.0 | 3.41e-01 | 80.7% | 78.0% |
| 4ehiA02 | 3.40.140.20 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain | 0.63 | 55.0 | 4.47e-01 | 96.4% | 76.9% |
| 1t4lB00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.61 | 42.0 | 4.10e-01 | 71.1% | 64.4% |
| 2dbbA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.58 | 41.0 | 3.96e-01 | 73.5% | 91.4% |
| 6kryA01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.58 | 42.0 | 3.51e-01 | 75.9% | 100.0% |
| 1zczA02 | 3.40.140.20 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain | 0.57 | 49.0 | 4.44e-01 | 98.8% | 97.4% |
| 2qlcA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.57 | 45.0 | 4.04e-01 | 90.4% | 58.7% |
| 1yd0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.53 | 38.0 | 3.78e-01 | 100.0% | 71.9% |
| 6qssB02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.53 | 38.0 | 3.11e-01 | 77.1% | 90.7% |
| 3n2qA02 | 3.30.300.190 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.52 | 40.0 | 3.63e-01 | 84.3% | 88.8% |
| 4clcA00 | 3.30.450.150 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain | 0.51 | 39.0 | 3.14e-01 | 81.9% | 65.7% |
| 3m70A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 38.0 | 3.51e-01 | 98.8% | 61.3% |
| 6genR01 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.50 | 43.0 | 4.17e-01 | 98.8% | 89.4% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4947404 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.84 | 70.0 | 5.45e-01 | 88.0% | 63.4% |
| 5042416 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.82 | 70.0 | 5.42e-01 | 90.4% | 62.4% |
| 3231886 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.82 | 63.0 | 5.35e-01 | 80.7% | 72.3% |
| 3385458 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.80 | 67.0 | 5.22e-01 | 88.0% | 96.4% |
| 11432 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.80 | 71.0 | 5.81e-01 | 94.0% | 83.0% |
| 3505350 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.80 | 68.0 | 5.25e-01 | 89.2% | 70.3% |
| 3949946 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.80 | 68.0 | 5.30e-01 | 90.4% | 86.1% |
| 3962828 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.80 | 67.0 | 5.39e-01 | 89.2% | 93.3% |
| 4179812 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.78 | 68.0 | 5.50e-01 | 91.6% | 61.4% |
| 3312622 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.77 | 65.0 | 5.18e-01 | 91.6% | 91.9% |
| 3945615 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.76 | 63.0 | 5.10e-01 | 90.4% | 48.7% |
| 3830301 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.76 | 66.0 | 5.12e-01 | 94.0% | 97.1% |
| 3577468 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.74 | 67.0 | 5.09e-01 | 96.4% | 81.7% |
| 5049120 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.73 | 62.0 | 4.96e-01 | 91.6% | 58.7% |
| 4967732 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.72 | 62.0 | 5.02e-01 | 91.6% | 62.2% |
| 5065878 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.72 | 61.0 | 4.97e-01 | 91.6% | 63.1% |
| 4614122 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.71 | 59.0 | 4.63e-01 | 90.4% | 43.5% |
| 3758198 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.70 | 59.0 | 4.34e-01 | 90.4% | 71.9% |
| None | — | 0.70 | 59.0 | 4.54e-01 | 90.4% | 78.3% | |
| 4236834 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.63 | 44.0 | 4.41e-01 | 100.0% | 71.8% |
| 4987175 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.59 | 51.0 | 3.28e-01 | 95.2% | 55.6% |
| 4947741 | 821.1.1.17 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF27096 | 0.58 | 41.0 | 4.07e-01 | 100.0% | 71.8% |
| 4060463 | 304.4.1.1 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg | 0.58 | 41.0 | 4.01e-01 | 75.9% | 93.5% |
| 5070409 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.57 | 40.0 | 3.97e-01 | 100.0% | 68.2% |
| 3207742 | 2492.1.1.32 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › OTT_1508_deam | 0.57 | 48.0 | 3.67e-01 | 98.8% | 57.7% |
| 3702168 | 2004.1.1.17 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head | 0.57 | 47.0 | 2.78e-01 | 94.0% | 40.2% |
| None | — | 0.56 | 48.0 | 2.72e-01 | 96.4% | 29.9% | |
| None | — | 0.56 | 48.0 | 2.71e-01 | 96.4% | 29.5% | |
| 4974405 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.55 | 40.0 | 3.95e-01 | 100.0% | 71.1% |
| 3847882 | 2004.1.1.17 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head | 0.55 | 47.0 | 2.76e-01 | 96.4% | 39.1% |
| None | — | 0.54 | 46.0 | 2.73e-01 | 96.4% | 41.7% | |
| 3778657 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 46.0 | 2.71e-01 | 96.4% | 40.1% |
| 3995175 | 2004.1.1.17 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head | 0.54 | 45.0 | 2.73e-01 | 91.6% | 47.9% |
| 3617674 | 2004.1.1.17 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head | 0.54 | 47.0 | 2.75e-01 | 96.4% | 39.2% |
| 4170310 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.54 | 40.0 | 3.94e-01 | 100.0% | 72.2% |
| 3224132 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.53 | 39.0 | 3.81e-01 | 77.1% | 87.8% |
| 3494073 | 2004.1.1.17 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head | 0.53 | 47.0 | 2.80e-01 | 97.6% | 49.5% |
| 3627715 | 2004.1.1.17 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head | 0.52 | 43.0 | 2.52e-01 | 96.4% | 32.7% |
| 4578097 | 2004.1.1.17 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head | 0.51 | 44.0 | 2.64e-01 | 96.4% | 39.1% |
| 3580624 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.51 | 46.0 | 3.57e-01 | 100.0% | 68.3% |
| 5047474 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.51 | 44.0 | 4.24e-01 | 100.0% | 82.1% |
| 4943023 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.51 | 47.0 | 4.03e-01 | 100.0% | 76.2% |
| 4114744 | 2004.1.1.17 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head | 0.51 | 44.0 | 2.59e-01 | 97.6% | 48.2% |
| 3607428 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.50 | 38.0 | 3.51e-01 | 81.9% | 80.9% |
| 3714477 | 4139.1.1.1 ↗ | a+b two layers › AMMECR1-like › AMMECR1-like › AMMECR1-like › AMMECR1 | 0.50 | 46.0 | 4.15e-01 | 100.0% | 86.4% |