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rifcsphigho2_12_scaffold_16_prodigal-single.1__X__X__00488
Bact-Virrifcsphigho2_12_scaffold_16_prodigal-single.1__X__X__00488
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 6-18_90-162
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3n5fA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.71 | 51.0 | 4.64e-01 | 75.6% | 100.0% |
| 1rypK00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.65 | 58.0 | 4.43e-01 | 100.0% | 44.9% |
| 1txoB00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.64 | 58.0 | 4.20e-01 | 100.0% | 61.9% |
| 6qm7J00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.64 | 56.0 | 4.30e-01 | 100.0% | 42.6% |
| 6z46V01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.62 | 54.0 | 4.27e-01 | 100.0% | 46.7% |
| 5c17A00 | 3.30.450.410 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.61 | 40.0 | 3.04e-01 | 100.0% | 27.7% |
| 2ijrA01 | 3.30.70.1270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Api92-like domains | 0.59 | 51.0 | 4.94e-01 | 100.0% | 95.9% |
| 4cllA01 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.59 | 51.0 | 3.92e-01 | 100.0% | 68.6% |
| 1s6lA02 | 3.15.10.60 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Alkylmercury lyase | 0.58 | 39.0 | 3.44e-01 | 100.0% | 46.5% |
| 3dfeA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 42.0 | 4.27e-01 | 77.9% | 96.3% |
| 4dezA01 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.57 | 49.0 | 4.75e-01 | 100.0% | 99.0% |
| 1e88A03 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.57 | 28.0 | 3.62e-01 | 93.0% | 92.9% |
| 2hiyA01 | 3.30.70.1280 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SP0830-like domains | 0.55 | 42.0 | 4.24e-01 | 83.7% | 89.8% |
| 3p54A02 | 3.30.67.10 | Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 | 0.53 | 27.0 | 2.95e-01 | 100.0% | 57.7% |
| 5k6uA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 34.0 | 3.37e-01 | 93.0% | 64.4% |
| 1edhA01 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.51 | 37.0 | 3.59e-01 | 77.9% | 94.9% |
| 6wwdB00 | 3.90.950.10 | Alpha Beta › Alpha-Beta Complex › Maf protein › | 0.50 | 42.0 | 3.32e-01 | 95.3% | 67.4% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1734768 | 4187.1.1.1 ↗ | a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › MerB | 0.61 | 40.0 | 4.59e-01 | 100.0% | 98.3% |
| 3286351 | 304.154.1.1 ↗ | a+b two layers › Alpha-beta plaits › Regulator of polyketide synthase expression N-terminal domain › Regulator of polyketide synthase expression N-terminal domain › GGDEF_2 | 0.59 | 51.0 | 4.39e-01 | 100.0% | 76.6% |
| 3271498 | 304.121.1.1 ↗ | a+b two layers › Alpha-beta plaits › SP0830-like › SP0830-like › DUF1697 | 0.55 | 43.0 | 4.28e-01 | 86.0% | 92.2% |
| 3527162 | 304.9.1.86 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF26088 | 0.55 | 39.0 | 3.87e-01 | 75.6% | 87.8% |
| 3877310 | 2004.1.1.250 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd | 0.53 | 45.0 | 2.86e-01 | 98.8% | 33.1% |
| 3583463 | 11.1.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin | 0.53 | 40.0 | 3.52e-01 | 80.2% | 90.0% |
| 3838342 | 3799.1.1.1 ↗ | alpha bundles › SabA N-terminal extracellular adhesion domain › SabA N-terminal extracellular adhesion domain › SabA N-terminal extracellular adhesion domain › SabA_adhesion | 0.51 | 42.0 | 2.69e-01 | 94.2% | 24.3% |
| 4019442 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.51 | 36.0 | 3.23e-01 | 76.7% | 83.8% |
| 3167972 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.50 | 42.0 | 2.51e-01 | 100.0% | 24.0% |