←Back to structures
rifcsphigho2_12_scaffold_16_prodigal-single.1__X__X__00531
Bact-Virrifcsphigho2_12_scaffold_16_prodigal-single.1__X__X__00531
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-86
Domain cluster:
rep: DNA-dependent_RNA_polymerase_subunit_rpo147__YP_232980__Vaccinia_virus__10245__D277-311_370-443
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02359.25 best | CDC48_N | 89.8 | 1.50e-25 | 97.6% | 95.3% |
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hu1A01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.91 | 84.0 | 7.99e-01 | 100.0% | 85.4% |
| 1cz4A01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.88 | 84.0 | 8.10e-01 | 100.0% | 91.3% |
| 1cr5A01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.88 | 75.0 | 7.88e-01 | 100.0% | 98.7% |
| 1wlfA01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.86 | 76.0 | 7.69e-01 | 100.0% | 95.2% |
| 1y5lA02 | 3.40.50.12440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.84 | 78.0 | 4.26e-01 | 100.0% | 12.0% |
| 4ga6A01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.84 | 75.0 | 7.62e-01 | 98.8% | 97.6% |
| 1qcsA01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.83 | 74.0 | 7.50e-01 | 100.0% | 97.6% |
| 1h0hA04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.83 | 77.0 | 5.91e-01 | 100.0% | 73.9% |
| 1aw8B00 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.83 | 61.0 | 5.97e-01 | 79.8% | 71.4% |
| 1dmrA04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.82 | 76.0 | 5.98e-01 | 98.8% | 79.1% |
| 1zc1A01 | 2.40.40.50 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › Ubiquitin fusion degradation protein UFD1, N-terminal domain | 0.82 | 76.0 | 7.08e-01 | 100.0% | 92.2% |
| 1g8kA04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.82 | 76.0 | 6.34e-01 | 98.8% | 83.7% |
| 1ti2A04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.82 | 76.0 | 6.09e-01 | 100.0% | 89.0% |
| 1q16A13 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.82 | 76.0 | 6.15e-01 | 100.0% | 77.3% |
| 8e9gG01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.82 | 74.0 | 6.93e-01 | 96.4% | 100.0% |
| 7nz1G01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.81 | 74.0 | 7.01e-01 | 96.4% | 100.0% |
| 2napA04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.81 | 74.0 | 6.57e-01 | 97.6% | 99.1% |
| 2ki8A01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.81 | 76.0 | 6.52e-01 | 100.0% | 85.6% |
| 1ogyA04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.80 | 74.0 | 6.40e-01 | 98.8% | 94.3% |
| 1ynjD04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.80 | 75.0 | 6.12e-01 | 100.0% | 85.5% |
| 2e7zA04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.80 | 73.0 | 5.82e-01 | 100.0% | 83.2% |
| 3ougA00 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.80 | 70.0 | 6.48e-01 | 100.0% | 75.5% |
| 3d30A01 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.79 | 73.0 | 6.66e-01 | 100.0% | 92.6% |
| 6cz7C02 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.79 | 68.0 | 5.79e-01 | 92.9% | 100.0% |
| 2vpzA05 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.79 | 72.0 | 5.76e-01 | 100.0% | 80.5% |
| 1yleA02 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.78 | 55.0 | 6.26e-01 | 98.8% | 95.4% |
| 2iv2X04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.76 | 70.0 | 6.61e-01 | 100.0% | 99.0% |
| 4jcwA01 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.75 | 69.0 | 6.40e-01 | 100.0% | 96.2% |
| 1n10A01 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.75 | 69.0 | 6.16e-01 | 100.0% | 95.6% |
| 1twfB06 | 2.40.270.10 | Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 | 0.75 | 67.0 | 4.91e-01 | 100.0% | 69.1% |
| 3m3gA00 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.72 | 65.0 | 5.70e-01 | 97.6% | 93.3% |
| 5c9dB00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.64 | 54.0 | 4.78e-01 | 92.9% | 79.2% |
| 1e62A01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.62 | 55.0 | 4.80e-01 | 100.0% | 89.8% |
| 1yfbA00 | 2.10.260.10 | Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › | 0.62 | 34.0 | 4.12e-01 | 97.6% | 86.5% |
| 5b6iA02 | 2.40.30.90 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like | 0.62 | 55.0 | 5.08e-01 | 100.0% | 91.6% |
| 7ylrA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.59 | 52.0 | 4.89e-01 | 100.0% | 99.0% |
| 7tbdB02 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.59 | 48.0 | 3.91e-01 | 90.5% | 73.6% |
| 1smrA02 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.58 | 48.0 | 3.99e-01 | 91.7% | 74.8% |
| 1dpjA02 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.57 | 46.0 | 3.81e-01 | 89.3% | 75.3% |
| 3pihA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.55 | 38.0 | 4.06e-01 | 96.4% | 83.3% |
| 2al3A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.54 | 38.0 | 4.01e-01 | 100.0% | 85.5% |
| 1vajA02 | 3.30.1490.150 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Hypothetical protein ph0010; domain 2 | 0.51 | 39.0 | 4.08e-01 | 100.0% | 94.6% |
| 8eq1A01 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.51 | 43.0 | 4.32e-01 | 97.6% | 100.0% |
| 2r6fA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.50 | 35.0 | 3.73e-01 | 95.2% | 86.1% |
ECOD (100)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4943791 | 1.1.2.45 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_2 | 1.00 | 96.0 | 9.64e-01 | 98.8% | 97.6% |
| 4967302 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 1.00 | 98.0 | 9.48e-01 | 100.0% | 93.3% |
| 5074498 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 1.00 | 97.0 | 8.46e-01 | 100.0% | 73.0% |
| 4938645 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.99 | 94.0 | 9.44e-01 | 97.6% | 96.5% |
| 4947745 | 1.1.2.45 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_2 | 0.99 | 97.0 | 9.40e-01 | 100.0% | 94.4% |
| 4927622 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.99 | 96.0 | 9.38e-01 | 100.0% | 94.4% |
| 4967958 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.99 | 96.0 | 9.13e-01 | 100.0% | 88.4% |
| 5066567 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.99 | 95.0 | 8.99e-01 | 98.8% | 88.4% |
| 4943103 | 1.1.2.45 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_2 | 0.98 | 94.0 | 9.43e-01 | 98.8% | 98.8% |
| 4978544 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.98 | 93.0 | 9.30e-01 | 97.6% | 96.5% |
| 4995073 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.98 | 92.0 | 9.19e-01 | 96.4% | 100.0% |
| 4954799 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.98 | 95.0 | 9.01e-01 | 100.0% | 89.5% |
| 5052052 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.98 | 93.0 | 8.86e-01 | 100.0% | 87.4% |
| 4979696 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.97 | 93.0 | 9.28e-01 | 100.0% | 97.6% |
| 5053341 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.97 | 94.0 | 8.72e-01 | 100.0% | 87.0% |
| 4948370 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.97 | 94.0 | 7.63e-01 | 100.0% | 60.9% |
| 4998501 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.97 | 91.0 | 9.14e-01 | 97.6% | 97.6% |
| 5001338 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.95 | 92.0 | 8.78e-01 | 100.0% | 90.5% |
| 1883479 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.95 | 91.0 | 8.90e-01 | 100.0% | 93.3% |
| 4097451 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.95 | 92.0 | 9.17e-01 | 100.0% | 98.8% |
| 5001485 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.95 | 89.0 | 8.90e-01 | 98.8% | 96.5% |
| 4970084 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.94 | 90.0 | 9.00e-01 | 98.8% | 100.0% |
| 5060583 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.94 | 89.0 | 8.86e-01 | 100.0% | 97.6% |
| 5048782 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.93 | 84.0 | 8.24e-01 | 95.2% | 97.8% |
| 5005269 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.92 | 87.0 | 7.13e-01 | 100.0% | 85.0% |
| 3409396 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.91 | 85.0 | 7.72e-01 | 100.0% | 78.1% |
| 3486347 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.91 | 84.0 | 8.03e-01 | 100.0% | 86.3% |
| 3611762 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.89 | 85.0 | 8.12e-01 | 100.0% | 88.4% |
| 4241168 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.89 | 81.0 | 8.30e-01 | 97.6% | 100.0% |
| 5076635 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.89 | 83.0 | 8.31e-01 | 100.0% | 97.6% |
| 5037727 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.89 | 81.0 | 8.12e-01 | 98.8% | 95.3% |
| 5006472 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.88 | 79.0 | 8.16e-01 | 94.0% | 100.0% |
| 31 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.88 | 83.0 | 8.11e-01 | 100.0% | 92.3% |
| 5041263 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.88 | 81.0 | 8.13e-01 | 98.8% | 96.5% |
| 4986590 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.88 | 80.0 | 8.04e-01 | 98.8% | 95.3% |
| 4970929 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.88 | 82.0 | 8.23e-01 | 100.0% | 97.6% |
| 5011232 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.88 | 78.0 | 8.00e-01 | 100.0% | 98.8% |
| 5074983 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.88 | 81.0 | 7.93e-01 | 100.0% | 91.1% |
| 3748306 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.88 | 83.0 | 7.93e-01 | 100.0% | 95.8% |
| 4931749 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.88 | 81.0 | 8.07e-01 | 98.8% | 96.5% |
| 4024752 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.88 | 82.0 | 7.66e-01 | 100.0% | 83.0% |
| 4488210 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.88 | 79.0 | 7.96e-01 | 98.8% | 95.3% |
| 4938514 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.88 | 80.0 | 8.01e-01 | 96.4% | 95.3% |
| 3740563 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.88 | 82.0 | 7.82e-01 | 100.0% | 91.6% |
| 5076554 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.87 | 77.0 | 7.90e-01 | 96.4% | 97.5% |
| 4607187 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.87 | 83.0 | 7.89e-01 | 100.0% | 88.4% |
| 5053173 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.87 | 80.0 | 7.61e-01 | 100.0% | 85.3% |
| 4445483 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.87 | 80.0 | 8.00e-01 | 98.8% | 96.5% |
| 5048468 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.87 | 71.0 | 7.52e-01 | 97.6% | 96.0% |
| 3169042 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.87 | 82.0 | 7.65e-01 | 100.0% | 89.0% |
| 3725766 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.87 | 81.0 | 7.76e-01 | 100.0% | 94.7% |
| 3602941 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.86 | 79.0 | 7.93e-01 | 100.0% | 96.5% |
| 4941448 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.86 | 79.0 | 7.92e-01 | 98.8% | 96.5% |
| 5074694 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.86 | 78.0 | 6.40e-01 | 97.6% | 57.1% |
| 4963913 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.86 | 75.0 | 7.70e-01 | 98.8% | 96.2% |
| 4977837 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.86 | 79.0 | 7.89e-01 | 98.8% | 96.5% |
| 4981335 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.86 | 80.0 | 7.96e-01 | 100.0% | 97.6% |
| 5060748 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.86 | 81.0 | 7.27e-01 | 100.0% | 76.4% |
| 4508340 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.86 | 80.0 | 7.38e-01 | 100.0% | 84.8% |
| 3463336 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.86 | 82.0 | 7.62e-01 | 100.0% | 96.0% |
| 3332068 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.86 | 80.0 | 6.33e-01 | 98.8% | 99.4% |
| 3273202 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.86 | 80.0 | 7.49e-01 | 100.0% | 92.0% |
| 4526788 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.86 | 76.0 | 7.76e-01 | 97.6% | 98.8% |
| 4977163 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.86 | 77.0 | 7.57e-01 | 100.0% | 90.9% |
| 5055583 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.86 | 79.0 | 7.94e-01 | 98.8% | 97.6% |
| 33 | 1.1.2.15 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › PEX-2N | 0.86 | 76.0 | 7.69e-01 | 100.0% | 95.2% |
| 5079577 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.86 | 74.0 | 7.58e-01 | 95.2% | 96.2% |
| 5060218 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.86 | 80.0 | 7.97e-01 | 98.8% | 98.8% |
| 5047687 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.85 | 73.0 | 7.52e-01 | 92.9% | 95.0% |
| 4970875 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.85 | 78.0 | 7.83e-01 | 100.0% | 96.5% |
| 5069203 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.85 | 79.0 | 7.76e-01 | 100.0% | 93.3% |
| 4946804 | 1.1.2.44 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Glycos_trans_3N | 0.85 | 78.0 | 7.84e-01 | 100.0% | 97.6% |
| 4951261 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.85 | 75.0 | 6.57e-01 | 94.0% | 85.0% |
| 4021338 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.85 | 80.0 | 7.48e-01 | 100.0% | 94.0% |
| 4979744 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.85 | 80.0 | 6.74e-01 | 100.0% | 83.8% |
| 4263053 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.85 | 77.0 | 7.75e-01 | 98.8% | 96.5% |
| 5045002 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.85 | 76.0 | 7.48e-01 | 98.8% | 90.0% |
| 4354975 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.84 | 80.0 | 6.25e-01 | 100.0% | 53.1% |
| 4995354 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.84 | 78.0 | 7.80e-01 | 98.8% | 97.6% |
| 5054391 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.84 | 77.0 | 7.69e-01 | 100.0% | 96.5% |
| 3352481 | 1.1.2.35 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › PF26429 | 0.84 | 78.0 | 6.38e-01 | 100.0% | 84.1% |
| 3492328 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.84 | 74.0 | 7.57e-01 | 98.8% | 98.8% |
| 5077330 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.83 | 75.0 | 6.91e-01 | 98.8% | 77.1% |
| 4200338 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.83 | 78.0 | 7.13e-01 | 100.0% | 93.3% |
| 5000887 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.83 | 77.0 | 6.56e-01 | 100.0% | 85.4% |
| 3890530 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.83 | 78.0 | 7.58e-01 | 100.0% | 98.9% |
| 3514644 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.82 | 76.0 | 7.46e-01 | 100.0% | 93.3% |
| 3393273 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.82 | 75.0 | 7.54e-01 | 100.0% | 97.6% |
| 4402984 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.82 | 76.0 | 7.01e-01 | 100.0% | 100.0% |
| 5045656 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.82 | 76.0 | 6.40e-01 | 100.0% | 87.2% |
| 3740397 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.81 | 72.0 | 6.94e-01 | 96.4% | 100.0% |
| 4958644 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.80 | 72.0 | 6.89e-01 | 96.4% | 100.0% |
| 4122334 | 1.1.2.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Asp_decarbox | 0.80 | 72.0 | 5.98e-01 | 100.0% | 57.9% |
| 4992324 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.80 | 74.0 | 5.59e-01 | 100.0% | 85.8% |
| 4670243 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.80 | 74.0 | 6.94e-01 | 100.0% | 93.0% |
| 4378314 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.80 | 73.0 | 7.14e-01 | 100.0% | 96.7% |
| 4485138 | 1.1.2.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Asp_decarbox | 0.79 | 71.0 | 6.13e-01 | 100.0% | 64.8% |
| 4863286 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.78 | 69.0 | 6.91e-01 | 100.0% | 95.3% |
| 3933010 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.77 | 72.0 | 6.65e-01 | 100.0% | 82.9% |
| 4934824 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.69 | 59.0 | 5.96e-01 | 100.0% | 96.5% |
D2
medium
residues 90-167
Domain cluster:
rep: IMGVR_UViG_3300001073_000001-3300001073-C687J13245_10000113__D94-163
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02933.24 best | CDC48_2 | 45.2 | 8.30e-12 | 78.2% | 82.8% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jv2A00 | 3.10.330.10 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.85 | 71.0 | 7.23e-01 | 97.4% | 90.8% |
| 1cz4A02 | 3.10.330.10 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.81 | 76.0 | 7.51e-01 | 100.0% | 100.0% |
| 1qcsA02 | 3.10.330.10 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.81 | 75.0 | 6.69e-01 | 100.0% | 85.7% |
| 1wlfA02 | 3.10.330.10 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.79 | 74.0 | 7.36e-01 | 100.0% | 97.5% |
| 1zc1A02 | 3.10.330.10 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.78 | 70.0 | 7.13e-01 | 98.7% | 100.0% |
| 1cr5B02 | 3.10.330.10 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.77 | 72.0 | 6.65e-01 | 98.7% | 90.5% |
| 2pjhB02 | 3.10.330.10 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.77 | 69.0 | 6.22e-01 | 100.0% | 72.6% |
| 4lxjA01 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.59 | 45.0 | 2.92e-01 | 84.6% | 78.9% |
| 7kggC01 | 3.30.2090.10 | Alpha Beta › 2-Layer Sandwich › Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains › Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains | 0.59 | 42.0 | 4.08e-01 | 75.6% | 100.0% |
| 5ib9A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.56 | 42.0 | 2.97e-01 | 84.6% | 89.5% |
| 1tulA00 | 2.70.40.20 | Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Baculovirus telokin-like protein 20 | 0.53 | 38.0 | 3.53e-01 | 76.9% | 81.4% |
| 5uznA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.52 | 37.0 | 3.71e-01 | 75.6% | 98.8% |
| 1j2vA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 37.0 | 3.53e-01 | 82.1% | 99.0% |
ECOD (96)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4928939 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.95 | 83.0 | 8.05e-01 | 100.0% | 83.5% |
| 5078755 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.95 | 84.0 | 8.61e-01 | 100.0% | 96.0% |
| 4929938 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.94 | 83.0 | 7.99e-01 | 100.0% | 83.5% |
| 4978260 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.94 | 83.0 | 8.27e-01 | 100.0% | 90.0% |
| 5045055 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.93 | 82.0 | 7.98e-01 | 100.0% | 84.7% |
| 4940825 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.93 | 83.0 | 8.02e-01 | 100.0% | 84.7% |
| 4967109 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.93 | 81.0 | 8.31e-01 | 98.7% | 94.7% |
| 4340211 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.93 | 82.0 | 8.15e-01 | 100.0% | 90.0% |
| 5082055 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.93 | 89.0 | 8.63e-01 | 100.0% | 92.9% |
| 4982744 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.92 | 80.0 | 8.23e-01 | 100.0% | 94.7% |
| 4976725 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.92 | 83.0 | 8.46e-01 | 100.0% | 97.3% |
| 4943792 | 229.1.1.12 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › AAA | 0.92 | 82.0 | 7.97e-01 | 100.0% | 85.9% |
| 4927423 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.92 | 74.0 | 7.85e-01 | 100.0% | 94.3% |
| 4601870 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.91 | 87.0 | 8.04e-01 | 100.0% | 85.3% |
| 4931095 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.91 | 79.0 | 8.11e-01 | 100.0% | 94.7% |
| 5075127 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.91 | 82.0 | 8.11e-01 | 100.0% | 91.3% |
| 5045457 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.91 | 81.0 | 7.80e-01 | 98.7% | 84.7% |
| 5042185 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.91 | 81.0 | 8.09e-01 | 100.0% | 91.3% |
| 4964939 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.91 | 83.0 | 7.68e-01 | 100.0% | 78.9% |
| 4998502 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.90 | 79.0 | 8.11e-01 | 100.0% | 96.0% |
| 5057265 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.90 | 81.0 | 8.09e-01 | 100.0% | 92.5% |
| 4927348 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.90 | 80.0 | 8.21e-01 | 98.7% | 97.3% |
| 5071198 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.90 | 79.0 | 8.13e-01 | 100.0% | 96.0% |
| 4970085 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.90 | 85.0 | 8.06e-01 | 100.0% | 90.0% |
| 5078747 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.89 | 82.0 | 8.16e-01 | 98.7% | 93.8% |
| 4964549 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.89 | 84.0 | 7.74e-01 | 98.7% | 86.3% |
| 5060584 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.89 | 84.0 | 8.14e-01 | 100.0% | 94.1% |
| 4991500 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.88 | 78.0 | 7.60e-01 | 98.7% | 85.9% |
| 5005633 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.88 | 83.0 | 7.71e-01 | 100.0% | 91.6% |
| 5001339 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.88 | 80.0 | 7.98e-01 | 100.0% | 93.8% |
| 5053342 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.88 | 76.0 | 7.82e-01 | 100.0% | 96.0% |
| 4964172 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.88 | 83.0 | 8.04e-01 | 100.0% | 92.9% |
| 4979697 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.87 | 83.0 | 7.85e-01 | 100.0% | 86.7% |
| 4980993 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.87 | 82.0 | 7.97e-01 | 100.0% | 91.8% |
| 4967303 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.87 | 81.0 | 7.70e-01 | 98.7% | 93.3% |
| 4991440 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.87 | 70.0 | 7.32e-01 | 100.0% | 94.3% |
| 4938646 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.87 | 82.0 | 8.19e-01 | 100.0% | 97.5% |
| 5083685 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.87 | 72.0 | 7.64e-01 | 96.2% | 97.1% |
| 4930241 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.86 | 81.0 | 7.62e-01 | 98.7% | 93.3% |
| 5026962 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.86 | 78.0 | 7.79e-01 | 100.0% | 93.8% |
| 4995599 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.86 | 81.0 | 8.04e-01 | 100.0% | 96.2% |
| 4972002 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.86 | 82.0 | 7.23e-01 | 100.0% | 95.2% |
| 4024191 | 229.1.1.8 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › UFD1_N2 | 0.86 | 75.0 | 7.64e-01 | 100.0% | 96.0% |
| 5054457 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.85 | 80.0 | 7.39e-01 | 100.0% | 93.7% |
| 3286979 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.85 | 80.0 | 7.08e-01 | 98.7% | 87.6% |
| 4935915 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.85 | 78.0 | 7.44e-01 | 98.7% | 96.7% |
| 3516179 | 229.1.1.8 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › UFD1_N2 | 0.85 | 76.0 | 7.41e-01 | 100.0% | 89.3% |
| 3955566 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.85 | 81.0 | 7.15e-01 | 100.0% | 88.6% |
| 4976326 | 229.1.1.9 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › PRS2_N | 0.84 | 79.0 | 7.32e-01 | 100.0% | 90.5% |
| 4970748 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.84 | 80.0 | 7.39e-01 | 100.0% | 96.8% |
| 4942087 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.84 | 80.0 | 7.09e-01 | 100.0% | 92.4% |
| 3481990 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.83 | 77.0 | 7.63e-01 | 100.0% | 96.2% |
| 4932507 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.83 | 79.0 | 7.00e-01 | 100.0% | 87.6% |
| 3427277 | 229.1.1.8 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › UFD1_N2 | 0.83 | 74.0 | 7.20e-01 | 100.0% | 88.2% |
| 5017605 | 229.1.1.9 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › PRS2_N | 0.83 | 78.0 | 7.19e-01 | 100.0% | 88.4% |
| 4947976 | 229.1.1.12 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › AAA | 0.82 | 77.0 | 7.18e-01 | 100.0% | 89.5% |
| 5082007 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.82 | 69.0 | 7.09e-01 | 97.4% | 92.0% |
| 4013884 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.82 | 75.0 | 7.23e-01 | 100.0% | 95.5% |
| 5023786 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.81 | 76.0 | 6.67e-01 | 100.0% | 96.4% |
| 4991007 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.81 | 71.0 | 7.30e-01 | 100.0% | 100.0% |
| 4413380 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.81 | 75.0 | 6.98e-01 | 100.0% | 84.2% |
| 3219576 | 229.1.1.3 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › PEX-1N | 0.81 | 74.0 | 7.35e-01 | 98.7% | 97.5% |
| 3920214 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.80 | 74.0 | 7.20e-01 | 100.0% | 90.6% |
| 3832949 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.80 | 73.0 | 6.91e-01 | 97.4% | 93.3% |
| 3714287 | 229.1.1.3 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › PEX-1N | 0.80 | 74.0 | 6.88e-01 | 100.0% | 88.4% |
| 3762054 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.80 | 74.0 | 7.00e-01 | 100.0% | 88.9% |
| 3701561 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.79 | 72.0 | 7.03e-01 | 97.4% | 94.1% |
| 6000 | 229.1.1.3 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › PEX-1N | 0.79 | 74.0 | 7.36e-01 | 100.0% | 97.5% |
| 4951736 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.79 | 74.0 | 7.01e-01 | 100.0% | 86.7% |
| 4024751 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.79 | 73.0 | 6.79e-01 | 100.0% | 87.4% |
| 3255740 | 229.1.1.3 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › PEX-1N | 0.79 | 72.0 | 7.18e-01 | 100.0% | 96.2% |
| 3391424 | 229.1.1.3 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › PEX-1N | 0.79 | 72.0 | 7.15e-01 | 98.7% | 96.2% |
| 3727538 | 229.1.1.8 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › UFD1_N2 | 0.79 | 71.0 | 7.08e-01 | 100.0% | 96.2% |
| 3695134 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.79 | 71.0 | 6.56e-01 | 100.0% | 91.9% |
| 4559293 | 229.1.1.3 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › PEX-1N | 0.78 | 72.0 | 7.19e-01 | 100.0% | 98.8% |
| 3537546 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.78 | 72.0 | 6.47e-01 | 100.0% | 92.4% |
| 3596639 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.78 | 70.0 | 6.86e-01 | 97.4% | 97.6% |
| 3596666 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.78 | 72.0 | 6.81e-01 | 98.7% | 85.6% |
| 3715540 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.78 | 71.0 | 6.81e-01 | 100.0% | 91.1% |
| 3416888 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.78 | 71.0 | 6.31e-01 | 100.0% | 90.0% |
| 3177458 | 229.1.1.3 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › PEX-1N | 0.78 | 71.0 | 7.10e-01 | 98.7% | 96.2% |
| 3486352 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.78 | 72.0 | 6.85e-01 | 100.0% | 86.7% |
| 3618059 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.77 | 71.0 | 6.75e-01 | 100.0% | 94.4% |
| 4963228 | 229.1.1.13 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › PF25922 | 0.77 | 70.0 | 6.83e-01 | 98.7% | 97.6% |
| 3740735 | 229.1.1.3 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › PEX-1N | 0.77 | 70.0 | 6.65e-01 | 100.0% | 85.6% |
| 4944700 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.76 | 70.0 | 6.09e-01 | 100.0% | 67.8% |
| 3266037 | 229.1.1.6 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › PEX6_4th | 0.76 | 69.0 | 5.93e-01 | 98.7% | 92.5% |
| 3933009 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.76 | 67.0 | 6.41e-01 | 96.2% | 96.7% |
| 4180904 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.75 | 68.0 | 6.76e-01 | 100.0% | 95.0% |
| 3725767 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.75 | 68.0 | 6.48e-01 | 100.0% | 96.7% |
| 3926809 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.74 | 68.0 | 6.48e-01 | 100.0% | 90.0% |
| 5077331 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.72 | 65.0 | 6.24e-01 | 100.0% | 97.8% |
| 3580586 | 229.1.1.4 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › Pch2_N | 0.67 | 57.0 | 5.53e-01 | 97.4% | 92.2% |
| 3580677 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.64 | 56.0 | 5.38e-01 | 100.0% | 95.6% |
| 4951754 | 3674.1.1.0 ↗ | a+b duplicates or obligate multimers › Borealin C-terminal dimerization domain › Borealin C-terminal dimerization domain › Borealin C-terminal dimerization domain | 0.58 | 44.0 | 4.19e-01 | 83.3% | 95.8% |
| 3220544 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.56 | 38.0 | 3.37e-01 | 71.8% | 78.3% |
D3
medium
residues 174-216