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rifcsphigho2_12_scaffold_16_prodigal-single.1__X__X__00579
Bact-Virrifcsphigho2_12_scaffold_16_prodigal-single.1__X__X__00579
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 83-178
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4bi3A01 | 3.90.1720.80 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › | 0.62 | 42.0 | 4.33e-01 | 91.7% | 73.6% |
| 3lq6A02 | 2.40.30.120 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses | 0.60 | 49.0 | 4.67e-01 | 89.6% | 99.1% |
| 1ci0B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.59 | 43.0 | 3.39e-01 | 77.1% | 43.1% |
| 2l1tA00 | 2.30.110.70 | Mainly Beta › Roll › Pnp Oxidase; Chain A › | 0.59 | 42.0 | 4.08e-01 | 81.2% | 66.1% |
| 4qv2A02 | 2.40.30.120 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses | 0.59 | 48.0 | 4.47e-01 | 88.5% | 93.2% |
| 3q39B02 | 2.40.30.120 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses | 0.58 | 47.0 | 4.51e-01 | 87.5% | 98.2% |
| 1cqxA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.57 | 47.0 | 4.51e-01 | 90.6% | 96.4% |
| 4yhbA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.57 | 46.0 | 4.24e-01 | 90.6% | 99.2% |
| 4ecnA01 | 2.60.40.3540 | Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 | 0.57 | 37.0 | 3.64e-01 | 79.2% | 61.2% |
| 2qi2A01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.56 | 45.0 | 4.40e-01 | 92.7% | 80.8% |
| 4h75A00 | 2.80.10.70 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty | 0.56 | 39.0 | 3.09e-01 | 71.9% | 35.7% |
| 2eixA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.55 | 44.0 | 4.31e-01 | 87.5% | 94.3% |
| 3ghgB02 | 3.90.215.10 | Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 | 0.55 | 45.0 | 3.33e-01 | 90.6% | 94.3% |
| 6mv2A02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.55 | 43.0 | 4.25e-01 | 86.5% | 100.0% |
| 7ylrA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.54 | 42.0 | 4.09e-01 | 84.4% | 100.0% |
| 4l8jA02 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.54 | 45.0 | 4.61e-01 | 91.7% | 98.9% |
| 3wbiA04 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.54 | 46.0 | 4.04e-01 | 95.8% | 82.1% |
| 2ijzA02 | 2.30.250.10 | Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 | 0.53 | 41.0 | 3.97e-01 | 84.4% | 100.0% |
| 6y43A01 | 3.90.215.10 | Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 | 0.53 | 44.0 | 3.79e-01 | 89.6% | 92.5% |
| 2dpyA00 | 3.40.50.12240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 45.0 | 2.97e-01 | 94.8% | 53.1% |
| 7w6yA02 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.53 | 32.0 | 3.41e-01 | 79.2% | 70.4% |
| 2gk6A02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.53 | 42.0 | 4.49e-01 | 85.4% | 100.0% |
| 1y7eA02 | 2.30.250.10 | Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 | 0.53 | 41.0 | 3.87e-01 | 84.4% | 100.0% |
| 4i86A00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.53 | 40.0 | 3.95e-01 | 81.2% | 77.5% |
| 5e6tA02 | 2.40.30.120 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses | 0.52 | 41.0 | 4.22e-01 | 86.5% | 100.0% |
| 4rt0A00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.52 | 39.0 | 3.75e-01 | 79.2% | 78.9% |
| 6euaA01 | 3.90.215.10 | Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 | 0.52 | 43.0 | 3.83e-01 | 90.6% | 95.7% |
| 2gpjA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.52 | 41.0 | 4.07e-01 | 86.5% | 100.0% |
| 2f5tX02 | 2.30.30.690 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 42.0 | 4.36e-01 | 90.6% | 100.0% |
| 3ef2A02 | 3.30.460.70 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.51 | 39.0 | 3.45e-01 | 81.2% | 87.7% |
| 5ek8A01 | 2.60.40.3330 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 37.0 | 3.49e-01 | 88.5% | 61.1% |
| 7rkbA01 | 3.90.420.10 | Alpha Beta › Alpha-Beta Complex › Sulfite Oxidase; Chain A, domain 2 › Oxidoreductase, molybdopterin-binding domain | 0.50 | 37.0 | 3.34e-01 | 77.1% | 94.0% |
| 4odbA00 | 2.60.90.20 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Virus attachment protein , globular domain | 0.50 | 38.0 | 3.29e-01 | 83.3% | 80.2% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4930890 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.62 | 40.0 | 4.42e-01 | 79.2% | 84.0% |
| 5026851 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.59 | 47.0 | 4.27e-01 | 85.4% | 86.2% |
| 4864011 | 1.1.7.41 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › UPF1_1B_dom | 0.58 | 49.0 | 4.76e-01 | 93.8% | 100.0% |
| 3192391 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.58 | 47.0 | 4.30e-01 | 88.5% | 96.2% |
| 4502283 | 269.1.1.1 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C | 0.57 | 47.0 | 3.66e-01 | 90.6% | 98.6% |
| 3166182 | 1.1.7.87 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 | 0.56 | 46.0 | 4.74e-01 | 90.6% | 100.0% |
| 5055353 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.56 | 45.0 | 4.07e-01 | 86.5% | 85.4% |
| 4956630 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.56 | 40.0 | 3.45e-01 | 89.6% | 46.5% |
| 3947204 | 1.1.7.88 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 | 0.56 | 43.0 | 3.93e-01 | 84.4% | 87.7% |
| 4949773 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.56 | 40.0 | 3.56e-01 | 96.9% | 50.3% |
| 5057694 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.55 | 44.0 | 4.39e-01 | 87.5% | 100.0% |
| 3547457 | 269.1.1.1 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C | 0.55 | 45.0 | 3.45e-01 | 88.5% | 93.8% |
| 3810482 | 1.1.7.46 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SMUBP-2_HCS1_1B | 0.55 | 44.0 | 3.98e-01 | 87.5% | 96.3% |
| 3848687 | 269.1.1.1 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C | 0.55 | 45.0 | 3.14e-01 | 89.6% | 63.3% |
| 4571200 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.55 | 45.0 | 4.47e-01 | 89.6% | 100.0% |
| 4028981 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.55 | 44.0 | 3.47e-01 | 89.6% | 80.9% |
| 3614391 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.55 | 45.0 | 4.46e-01 | 90.6% | 100.0% |
| 3823190 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.55 | 45.0 | 3.87e-01 | 90.6% | 92.5% |
| 4958674 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.55 | 44.0 | 4.42e-01 | 90.6% | 98.0% |
| None | — | 0.55 | 45.0 | 4.24e-01 | 90.6% | 97.4% | |
| 3774692 | 4.1.1.31 ↗ | beta barrels › SH3 › SH3 › SH3 › Spin-Ssty | 0.55 | 40.0 | 4.30e-01 | 90.6% | 93.8% |
| 2455725 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.54 | 45.0 | 4.46e-01 | 93.8% | 99.0% |
| 4181458 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.54 | 45.0 | 4.32e-01 | 90.6% | 99.1% |
| 3401719 | 269.1.1.0 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like | 0.54 | 43.0 | 3.57e-01 | 89.6% | 94.7% |
| 3389696 | 269.1.1.1 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C | 0.54 | 43.0 | 3.12e-01 | 89.6% | 65.2% |
| 3526900 | 269.1.1.0 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like | 0.54 | 44.0 | 3.00e-01 | 91.7% | 52.5% |
| 3056322 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.54 | 43.0 | 4.15e-01 | 87.5% | 98.2% |
| 3279212 | 1.1.7.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_9 | 0.54 | 43.0 | 4.17e-01 | 88.5% | 93.6% |
| 3931783 | 1.1.7.41 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › UPF1_1B_dom | 0.54 | 43.0 | 4.33e-01 | 87.5% | 100.0% |
| 3714156 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 41.0 | 4.25e-01 | 81.2% | 95.3% |
| 3587863 | 3158.1.1.1 ↗ | beta barrels › uncharacterized protein RUMGNA_01417 › uncharacterized protein RUMGNA_01417 › uncharacterized protein RUMGNA_01417 › DUF5348 | 0.54 | 44.0 | 4.63e-01 | 88.5% | 100.0% |
| 3972868 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.54 | 42.0 | 4.21e-01 | 86.5% | 98.0% |
| 3712451 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 41.0 | 3.78e-01 | 83.3% | 67.2% |
| 3990594 | 269.1.1.1 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C | 0.53 | 46.0 | 3.64e-01 | 100.0% | 93.0% |
| 3783500 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.53 | 43.0 | 3.87e-01 | 89.6% | 75.6% |
| 4994895 | 4.15.1.2 ↗ | beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 | 0.53 | 41.0 | 4.40e-01 | 85.4% | 100.0% |
| 3386975 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.52 | 42.0 | 4.06e-01 | 90.6% | 100.0% |
| 3434538 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.52 | 42.0 | 3.33e-01 | 89.6% | 80.9% |
| 3415498 | 269.1.1.1 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C | 0.52 | 46.0 | 3.39e-01 | 99.0% | 83.5% |
| 4012802 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.52 | 44.0 | 4.30e-01 | 96.9% | 97.3% |
| 3598190 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 40.0 | 3.63e-01 | 83.3% | 83.8% |
| 5051220 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.52 | 40.0 | 4.09e-01 | 84.4% | 95.6% |
| 5053791 | 1.1.7.14 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › CTP-dep_RFKase | 0.51 | 41.0 | 3.69e-01 | 88.5% | 100.0% |
| 3332690 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.51 | 43.0 | 4.33e-01 | 92.7% | 95.0% |