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rifcsphigho2_12_scaffold_16_prodigal-single.1__X__X__00597

Bact-Vir

rifcsphigho2_12_scaffold_16_prodigal-single.1__X__X__00597

Identity

Kingdom:
phage

Quality

49.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 101-151
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6hoyA02 2.20.28.200 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.65 52.0 5.28e-01 92.2% 91.8%
6nw1A00 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.61 46.0 4.86e-01 82.4% 95.6%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3705148 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.77 57.0 5.99e-01 84.3% 91.1%
4990489 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.74 58.0 5.85e-01 84.3% 86.0%
4993851 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.74 53.0 5.59e-01 86.3% 86.7%
3705846 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.73 58.0 4.63e-01 90.2% 61.0%
3596753 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 56.0 5.68e-01 86.3% 94.0%
4096194 375.1.1.3 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L33 0.70 55.0 5.69e-01 84.3% 89.6%
3934797 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.70 62.0 4.53e-01 100.0% 38.5%
4666101 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 47.0 4.94e-01 92.2% 84.4%
3604685 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 50.0 4.83e-01 84.3% 80.0%
3719741 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 48.0 4.77e-01 86.3% 81.8%
3485716 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.60 46.0 3.14e-01 88.2% 23.2%
3488429 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.58 46.0 3.13e-01 88.2% 24.3%
D2 medium residues 173-224
PDB