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rifcsplowo2_12_scaffold_23_prodigal-single.1__X__X__00006
Bact-Virrifcsplowo2_12_scaffold_23_prodigal-single.1__X__X__00006
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 45-100
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2aj6A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.69 | 39.0 | 2.99e-01 | 94.6% | 25.8% |
| 4mhlA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.67 | 58.0 | 4.25e-01 | 100.0% | 100.0% |
| 2e5yA02 | 1.20.5.440 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain | 0.65 | 41.0 | 4.46e-01 | 73.2% | 80.0% |
| 1z0jB00 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.64 | 49.0 | 5.15e-01 | 100.0% | 90.2% |
| 4a17U01 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.62 | 47.0 | 4.25e-01 | 100.0% | 59.7% |
| 3q9oA02 | 3.90.1350.10 | Alpha Beta › Alpha-Beta Complex › Exotoxin A, middle domain › Exotoxin A, middle domain | 0.61 | 48.0 | 3.49e-01 | 89.3% | 88.0% |
| 3hlzA02 | 1.20.120.1090 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.60 | 47.0 | 3.65e-01 | 85.7% | 59.7% |
| 5b1oA00 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.60 | 49.0 | 4.67e-01 | 100.0% | 76.9% |
| 1f45B00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.60 | 50.0 | 3.80e-01 | 94.6% | 39.1% |
| 4od8D00 | 6.10.140.1880 | Special › Helix non-globular › Helix Hairpins › | 0.60 | 43.0 | 4.43e-01 | 80.4% | 84.3% |
| 8ai9B02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.60 | 47.0 | 3.94e-01 | 96.4% | 49.0% |
| 1yg2A02 | 6.10.140.190 | Special › Helix non-globular › Helix Hairpins › | 0.59 | 52.0 | 4.48e-01 | 100.0% | 73.3% |
| 1u7lA02 | 1.20.1460.10 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 | 0.59 | 51.0 | 3.60e-01 | 100.0% | 91.8% |
| 6qpqB00 | 1.10.10.580 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E | 0.58 | 42.0 | 3.80e-01 | 80.4% | 98.8% |
| 1ku9A02 | 1.10.287.450 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.57 | 51.0 | 4.88e-01 | 100.0% | 87.5% |
| 2wmmA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.57 | 45.0 | 4.79e-01 | 96.4% | 100.0% |
| 2fb5A01 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.57 | 51.0 | 4.70e-01 | 100.0% | 80.6% |
| 3lcnB00 | 1.10.340.40 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain | 0.57 | 43.0 | 3.63e-01 | 80.4% | 80.4% |
| 1t7sA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.57 | 50.0 | 3.83e-01 | 100.0% | 50.4% |
| 1wpaA01 | 6.10.140.340 | Special › Helix non-globular › Helix Hairpins › | 0.55 | 48.0 | 4.01e-01 | 100.0% | 59.6% |
| 1b3qA01 | 1.10.287.560 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Histidine kinase CheA-like, homodimeric domain | 0.55 | 48.0 | 4.70e-01 | 98.2% | 91.9% |
| 7ymiZ01 | 1.10.287.740 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre | 0.55 | 48.0 | 4.82e-01 | 98.2% | 100.0% |
| 4qpkB02 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.54 | 48.0 | 3.62e-01 | 100.0% | 87.3% |
| 2aplA02 | 1.10.8.340 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like | 0.54 | 38.0 | 3.41e-01 | 75.0% | 93.8% |
| 2olvB02 | 1.10.3810.10 | Mainly Alpha › Orthogonal Bundle › Penicillin binding protein transpeptidase fold › Biosynthetic peptidoglycan transglycosylase-like | 0.54 | 44.0 | 3.05e-01 | 91.1% | 85.3% |
| 3l1nA01 | 6.10.140.790 | Special › Helix non-globular › Helix Hairpins › | 0.52 | 40.0 | 4.20e-01 | 91.1% | 92.2% |
| 5tprA02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.52 | 45.0 | 3.07e-01 | 100.0% | 99.5% |
| 6xm1A02 | 3.90.830.10 | Alpha Beta › Alpha-Beta Complex › Syntaxin Binding Protein 1; Chain A, domain 2 › Sec1/Munc18 (SM) protein, domain 3a | 0.51 | 43.0 | 3.52e-01 | 100.0% | 50.4% |
| 4exjA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.51 | 45.0 | 3.51e-01 | 100.0% | 46.3% |
| 1vx7301 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.50 | 43.0 | 3.99e-01 | 98.2% | 78.4% |
| 3id7A00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.50 | 40.0 | 2.43e-01 | 89.3% | 27.9% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4475763 | 3755.1.1.11 ↗ | alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › She9_MDM33 | 0.67 | 56.0 | 3.77e-01 | 100.0% | 24.9% |
| 4014485 | 5044.1.1.0 ↗ | extended segments › PsbZ-like › PsbZ-like › PsbZ-like | 0.64 | 50.0 | 4.23e-01 | 85.7% | 83.2% |
| 3377481 | 3846.1.1.0 ↗ | alpha bundles › IcmR › IcmR › IcmR | 0.63 | 53.0 | 5.19e-01 | 100.0% | 85.0% |
| 3259416 | 3812.1.1.0 ↗ | alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE | 0.61 | 51.0 | 4.73e-01 | 91.1% | 97.1% |
| 3585354 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.61 | 51.0 | 4.37e-01 | 100.0% | 57.8% |
| 3260646 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 50.0 | 4.55e-01 | 91.1% | 81.3% |
| 3199024 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.60 | 52.0 | 3.50e-01 | 100.0% | 25.7% |
| 2914508 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.59 | 50.0 | 3.24e-01 | 100.0% | 19.4% |
| 3618651 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.59 | 53.0 | 4.56e-01 | 100.0% | 69.4% |
| 3630019 | 109.27.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › BACK | 0.58 | 39.0 | 3.05e-01 | 73.2% | 29.0% |
| 4032379 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.58 | 52.0 | 4.69e-01 | 100.0% | 82.7% |
| 3320830 | 109.4.1.1146 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_PUB | 0.58 | 45.0 | 2.88e-01 | 91.1% | 38.4% |
| 3346760 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.58 | 51.0 | 3.86e-01 | 100.0% | 44.4% |
| 3979725 | 3291.1.1.15 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › DUF2583 | 0.57 | 52.0 | 4.41e-01 | 100.0% | 67.8% |
| 3244992 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 46.0 | 2.85e-01 | 91.1% | 46.6% |
| 4030113 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.56 | 48.0 | 4.13e-01 | 100.0% | 60.0% |
| 3785883 | 4177.1.1.97 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › PF30147 | 0.56 | 50.0 | 3.46e-01 | 100.0% | 30.8% |
| 3410408 | 3712.1.1.0 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 | 0.55 | 48.0 | 4.20e-01 | 98.2% | 65.5% |
| 3794775 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.55 | 46.0 | 4.44e-01 | 100.0% | 81.5% |
| 3362460 | 304.60.1.6 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › KIP1 | 0.55 | 49.0 | 4.47e-01 | 100.0% | 78.7% |
| 2814626 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.54 | 47.0 | 2.99e-01 | 100.0% | 18.4% |
| 3685822 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.54 | 47.0 | 2.84e-01 | 100.0% | 13.7% |
| 3193224 | 219.1.1.23 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › MINDY_DUB | 0.53 | 42.0 | 2.85e-01 | 100.0% | 44.6% |
| 4650429 | 5055.1.1.0 ↗ | extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel | 0.52 | 45.0 | 3.79e-01 | 100.0% | 57.9% |
| 3765278 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.51 | 43.0 | 3.65e-01 | 96.4% | 57.9% |
| 4020464 | 1203.1.2.4 ↗ | alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 › Vps55 | 0.51 | 43.0 | 3.40e-01 | 100.0% | 57.4% |