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rifcsplowo2_12_scaffold_23_prodigal-single.1__X__X__00039
Bact-Virrifcsplowo2_12_scaffold_23_prodigal-single.1__X__X__00039
Identity
- Kingdom:
- phage
Quality
69.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 91-158
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2cqnA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.71 | 52.0 | 5.05e-01 | 77.9% | 79.2% |
| 3g2bA00 | 1.10.10.1150 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) | 0.70 | 52.0 | 4.78e-01 | 82.4% | 61.1% |
| 5y9sC01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 51.0 | 4.78e-01 | 92.6% | 68.3% |
| 5xnsC00 | 1.10.10.580 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E | 0.65 | 51.0 | 5.14e-01 | 91.2% | 84.3% |
| 2lsoA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 51.0 | 4.83e-01 | 86.8% | 85.5% |
| 2qm3A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 47.0 | 4.48e-01 | 86.8% | 65.1% |
| 2uubR00 | 4.10.640.10 | Few Secondary Structures › Irregular › 30s Ribosomal Protein S18 › Ribosomal protein S18 | 0.58 | 46.0 | 4.54e-01 | 97.1% | 80.8% |
| 5tebG00 | 3.40.50.10140 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Toll/interleukin-1 receptor homology (TIR) domain | 0.57 | 45.0 | 3.45e-01 | 85.3% | 96.2% |
| 1x7dB01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.57 | 45.0 | 3.35e-01 | 83.8% | 79.3% |
| 3rq9A00 | 1.10.287.2500 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 43.0 | 4.09e-01 | 80.9% | 87.2% |
| 1u8xX02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.56 | 44.0 | 2.98e-01 | 86.8% | 59.6% |
| 2ys8A00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.56 | 42.0 | 3.90e-01 | 82.4% | 63.3% |
| 2k6xA00 | 1.10.220.120 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Sigma-70 factor, region 1.1 | 0.56 | 45.0 | 4.44e-01 | 92.6% | 90.3% |
| 3kxpA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.55 | 44.0 | 3.09e-01 | 95.6% | 88.1% |
| 3p01A01 | 6.10.140.590 | Special › Helix non-globular › Helix Hairpins › | 0.55 | 39.0 | 3.67e-01 | 75.0% | 69.9% |
| 3o8jA02 | 1.10.230.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 | 0.54 | 40.0 | 3.57e-01 | 79.4% | 80.8% |
| 4pneA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 38.0 | 2.60e-01 | 75.0% | 42.2% |
| 1ax8A00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.53 | 42.0 | 3.39e-01 | 85.3% | 61.5% |
| 3a1yA00 | 1.10.10.1410 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.53 | 37.0 | 3.86e-01 | 75.0% | 91.4% |
| 2f33A01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.53 | 39.0 | 3.95e-01 | 83.8% | 84.5% |
| 1l9lA00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.53 | 36.0 | 3.61e-01 | 75.0% | 87.8% |
| 3kjxD01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.53 | 35.0 | 3.70e-01 | 98.5% | 78.7% |
| 2qsrA01 | 3.90.1150.50 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain | 0.51 | 41.0 | 3.24e-01 | 92.6% | 79.4% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4938693 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.76 | 56.0 | 5.16e-01 | 79.4% | 62.4% |
| 4928472 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.74 | 55.0 | 5.26e-01 | 82.4% | 67.5% |
| 4928641 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.73 | 55.0 | 5.38e-01 | 82.4% | 73.3% |
| 4963448 | 101.1.1.560 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PF26270 | 0.73 | 56.0 | 5.21e-01 | 100.0% | 66.3% |
| 5082787 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.69 | 54.0 | 4.82e-01 | 97.1% | 59.0% |
| 3336398 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 50.0 | 5.24e-01 | 86.8% | 88.3% |
| 4449615 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.68 | 53.0 | 4.87e-01 | 100.0% | 64.4% |
| 3404553 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 52.0 | 5.36e-01 | 85.3% | 93.8% |
| 4609007 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.67 | 44.0 | 5.02e-01 | 70.6% | 94.0% |
| 4157268 | 6102.1.1.1 ↗ | alpha arrays › N-terminal domain of segregation and condensation protein A, ScpA › N-terminal domain of segregation and condensation protein A, ScpA › N-terminal domain of segregation and condensation protein A, ScpA › SMC_ScpA | 0.65 | 52.0 | 3.57e-01 | 86.8% | 25.7% |
| 4166073 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.61 | 47.0 | 4.25e-01 | 86.8% | 63.0% |
| 4379330 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.59 | 40.0 | 4.20e-01 | 77.9% | 78.3% |
| 4513921 | 101.7.1.1 ↗ | alpha arrays › HTH › DEK-C › DEK-C › DEK_C | 0.59 | 42.0 | 4.40e-01 | 77.9% | 90.0% |
| 4984969 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 46.0 | 3.24e-01 | 97.1% | 25.6% |
| 3382967 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.58 | 51.0 | 3.49e-01 | 100.0% | 40.8% |
| 3669835 | 101.1.2.278 ↗ | alpha arrays › HTH › HTH › winged helix domain › CNDH2_C | 0.58 | 46.0 | 4.34e-01 | 97.1% | 71.8% |
| 3240537 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.57 | 48.0 | 2.92e-01 | 97.1% | 70.5% |
| 7488 | 279.1.1.2 ↗ | a+b complex topology › LDH C-terminal domain-like › LDH C-terminal domain-like › LDH C-terminal domain-like › Glyco_hydro_4C | 0.56 | 44.0 | 2.98e-01 | 86.8% | 59.9% |
| 3764760 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 45.0 | 3.93e-01 | 91.2% | 79.0% |
| 5013675 | 2004.1.1.76 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 | 0.54 | 47.0 | 2.87e-01 | 100.0% | 36.8% |
| 3668207 | 109.4.1.1258 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 | 0.53 | 47.0 | 3.42e-01 | 98.5% | 47.4% |
| 3299054 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 44.0 | 2.83e-01 | 97.1% | 68.9% |
| 3816669 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.52 | 44.0 | 2.68e-01 | 98.5% | 69.8% |