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rifcsplowo2_12_scaffold_23_prodigal-single.1__X__X__00125
Bact-Virrifcsplowo2_12_scaffold_23_prodigal-single.1__X__X__00125
Identity
- Kingdom:
- phage
Quality
59.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-87
D2
high
residues 105-151
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1f4qA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.69 | 59.0 | 4.12e-01 | 100.0% | 59.6% |
| 2pmyA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.67 | 53.0 | 4.66e-01 | 89.4% | 78.1% |
| 2bl0B01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.66 | 56.0 | 5.04e-01 | 100.0% | 83.8% |
| 1ij5A03 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.65 | 53.0 | 3.97e-01 | 95.7% | 45.0% |
| 3d31A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.64 | 51.0 | 3.43e-01 | 100.0% | 29.0% |
| 4ybaA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.62 | 49.0 | 4.40e-01 | 97.9% | 74.0% |
| 3i9v201 | 1.10.10.1590 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E | 0.62 | 43.0 | 3.83e-01 | 74.5% | 65.3% |
| 2bbwA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 43.0 | 2.78e-01 | 72.3% | 75.5% |
| 1eg3A04 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.62 | 49.0 | 4.31e-01 | 100.0% | 85.4% |
| 2mkxA00 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.61 | 47.0 | 4.66e-01 | 91.5% | 80.4% |
| 2auwB02 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.61 | 45.0 | 4.12e-01 | 87.2% | 77.1% |
| 7pjdC01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.61 | 50.0 | 3.53e-01 | 97.9% | 44.6% |
| 3fmyA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.61 | 45.0 | 4.23e-01 | 89.4% | 93.9% |
| 1vhxB00 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.59 | 40.0 | 2.88e-01 | 70.2% | 76.8% |
| 8e7cA02 | 1.10.1840.10 | Mainly Alpha › Orthogonal Bundle › main proteinase (3clpro) structure, domain 3 › main proteinase (3clpro) structure, domain 3 | 0.55 | 44.0 | 3.65e-01 | 97.9% | 70.4% |
| 2kldA01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.54 | 36.0 | 3.68e-01 | 70.2% | 89.1% |
| 2ruhA00 | 1.10.245.10 | Mainly Alpha › Orthogonal Bundle › MDM2 › SWIB/MDM2 domain | 0.54 | 38.0 | 2.93e-01 | 78.7% | 58.0% |
| 8e7nB02 | 1.10.1840.10 | Mainly Alpha › Orthogonal Bundle › main proteinase (3clpro) structure, domain 3 › main proteinase (3clpro) structure, domain 3 | 0.54 | 45.0 | 3.69e-01 | 100.0% | 67.3% |
| 2vqeM01 | 1.10.8.50 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.54 | 41.0 | 3.79e-01 | 93.6% | 83.1% |
| 5hmpB02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 40.0 | 3.79e-01 | 89.4% | 92.2% |
| 8gtyA02 | 3.30.420.150 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 | 0.53 | 39.0 | 2.71e-01 | 83.0% | 96.0% |
| 2zkmX02 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.52 | 40.0 | 3.89e-01 | 97.9% | 86.7% |
| 6ui4A01 | 1.20.120.720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain | 0.52 | 41.0 | 3.46e-01 | 93.6% | 85.2% |
| 7zhgO01 | 1.10.8.50 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.51 | 37.0 | 3.57e-01 | 93.6% | 86.4% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3592565 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.73 | 61.0 | 5.59e-01 | 100.0% | 90.8% |
| 3704867 | 108.1.1.44 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › FCaBP_EF-hand | 0.71 | 63.0 | 3.63e-01 | 100.0% | 40.4% |
| 3237573 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.71 | 58.0 | 5.29e-01 | 93.6% | 78.5% |
| 3241578 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.67 | 56.0 | 5.11e-01 | 100.0% | 86.4% |
| 4673146 | 108.1.1.29 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 | 0.64 | 54.0 | 4.57e-01 | 95.7% | 72.5% |
| 3949916 | 2484.1.1.29 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ppx-GppA | 0.64 | 48.0 | 3.29e-01 | 87.2% | 36.3% |
| 3470303 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.63 | 53.0 | 4.46e-01 | 95.7% | 76.2% |
| None | — | 0.63 | 51.0 | 4.63e-01 | 100.0% | 92.9% | |
| 1779783 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.63 | 50.0 | 4.45e-01 | 100.0% | 74.4% |
| 3459251 | 108.1.1.73 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 | 0.62 | 52.0 | 4.48e-01 | 97.9% | 80.0% |
| 3335466 | 108.1.1.28 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 | 0.62 | 51.0 | 4.22e-01 | 95.7% | 70.0% |
| 3480164 | 108.1.1.96 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 | 0.62 | 53.0 | 4.56e-01 | 97.9% | 85.3% |
| 3437370 | 108.1.1.73 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 | 0.62 | 52.0 | 3.98e-01 | 97.9% | 55.7% |
| 2802496 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.61 | 51.0 | 4.30e-01 | 100.0% | 89.7% |
| 3256995 | 108.1.1.28 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 | 0.61 | 49.0 | 4.49e-01 | 100.0% | 88.6% |
| 3573862 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.60 | 50.0 | 3.36e-01 | 100.0% | 31.4% |
| 3651470 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.59 | 49.0 | 3.66e-01 | 97.9% | 50.0% |
| 3871302 | 108.1.1.97 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 | 0.55 | 46.0 | 3.81e-01 | 100.0% | 70.5% |
| 4476441 | 7512.1.1.47 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › DUF3417 | 0.55 | 43.0 | 2.67e-01 | 95.7% | 69.7% |
| 3417004 | 367.1.1.0 ↗ | few secondary structure elements › Insulin-like › Insulin-like › Insulin-like | 0.55 | 45.0 | 4.01e-01 | 100.0% | 72.0% |
| 3611124 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.55 | 43.0 | 3.20e-01 | 100.0% | 46.5% |
| 3597445 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.55 | 46.0 | 3.93e-01 | 97.9% | 93.8% |
| 5060244 | 2484.1.1.21 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG | 0.54 | 41.0 | 2.54e-01 | 85.1% | 18.0% |
| 4023837 | 390.1.1.3 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › AMA-1 | 0.53 | 42.0 | 2.65e-01 | 97.9% | 31.7% |
| 4283614 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.52 | 36.0 | 2.97e-01 | 78.7% | 54.3% |
| 4015028 | 7525.1.1.0 ↗ | a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like | 0.51 | 39.0 | 2.64e-01 | 100.0% | 69.8% |
| 3809556 | 4070.1.1.2 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 | 0.50 | 38.0 | 2.68e-01 | 85.1% | 24.2% |