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rifcsplowo2_12_scaffold_23_prodigal-single.1__X__X__00149
Bact-Virrifcsplowo2_12_scaffold_23_prodigal-single.1__X__X__00149
Identity
- Kingdom:
- phage
Quality
86.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 420-660
Domain cluster:
rep: IMGVR_UViG_3300024336_000180-3300024336-Ga0233447_10073731__D153-310_322-359
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5mc9A02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.80 | 52.0 | 6.00e-01 | 94.6% | 86.8% |
| 2jd4A02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.78 | 50.0 | 5.87e-01 | 95.0% | 88.6% |
| 3asiA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.77 | 50.0 | 5.78e-01 | 95.0% | 87.1% |
| 1vavA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.70 | 52.0 | 5.43e-01 | 95.0% | 82.0% |
| 4agrB00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.68 | 42.0 | 5.25e-01 | 90.5% | 100.0% |
| 2r0hA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.68 | 44.0 | 5.31e-01 | 97.5% | 97.5% |
| 1ikpA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.65 | 48.0 | 5.02e-01 | 98.8% | 82.1% |
| 4xurA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.62 | 34.0 | 4.07e-01 | 95.4% | 77.6% |
| 3juuA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 50.0 | 4.80e-01 | 95.4% | 75.7% |
| 3q9oA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 46.0 | 4.85e-01 | 98.3% | 89.8% |
| 4h3wA01 | 2.60.290.20 | Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › Protein of unknown function (DUF4621), C-terminal domain | 0.58 | 31.0 | 4.23e-01 | 92.9% | 99.2% |
| 1ex0A04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 24.0 | 3.65e-01 | 94.6% | 100.0% |
| 4jdzA02 | 2.60.40.1290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 32.0 | 3.75e-01 | 97.5% | 85.5% |
| 2okmA00 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 30.0 | 3.67e-01 | 99.6% | 89.7% |
| 1fnfA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 23.0 | 3.42e-01 | 93.8% | 100.0% |
| 1fnfA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 22.0 | 3.35e-01 | 94.6% | 100.0% |
| 2bi0A02 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 31.0 | 3.80e-01 | 71.0% | 95.2% |
| 1xf1A03 | 2.60.40.1710 | Mainly Beta › Sandwich › Immunoglobulin-like › Subtilisin-like superfamily | 0.51 | 28.0 | 3.66e-01 | 94.2% | 96.2% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3900153 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.80 | 52.0 | 6.06e-01 | 95.0% | 89.7% |
| 3507129 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.77 | 46.0 | 5.48e-01 | 90.9% | 84.1% |
| 5083767 | 10.1.1.35 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 | 0.77 | 57.0 | 6.45e-01 | 100.0% | 98.4% |
| 3497266 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.72 | 53.0 | 5.67e-01 | 95.0% | 83.7% |
| 3884288 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.71 | 54.0 | 5.76e-01 | 95.0% | 88.1% |
| 3918435 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.68 | 55.0 | 5.19e-01 | 100.0% | 71.1% |
| 3901783 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.67 | 56.0 | 5.73e-01 | 100.0% | 90.0% |
| 4214272 | 10.1.1.2 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB | 0.66 | 54.0 | 5.30e-01 | 95.4% | 78.1% |
| 3458331 | 10.1.1.2 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB | 0.65 | 55.0 | 5.39e-01 | 95.4% | 81.2% |
| 3992573 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.65 | 57.0 | 5.93e-01 | 100.0% | 96.9% |
| 5039545 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.65 | 35.0 | 4.76e-01 | 90.5% | 100.0% |
| 3320577 | 10.1.1.2 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB | 0.64 | 56.0 | 5.43e-01 | 95.4% | 83.8% |
| 3378528 | 10.1.1.2 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB | 0.63 | 51.0 | 5.39e-01 | 95.4% | 92.3% |
| 4927301 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 24.0 | 3.30e-01 | 93.4% | 81.7% |
| 4360820 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 26.0 | 3.71e-01 | 94.6% | 99.1% |
| 421503 | 10.32.1.39 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PCMD | 0.52 | 39.0 | 3.82e-01 | 95.0% | 71.9% |
D2
medium
residues 1-92
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1whqA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.64 | 36.0 | 3.99e-01 | 84.8% | 70.4% |
| 2l2nA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.63 | 36.0 | 4.08e-01 | 88.0% | 73.2% |
| 1qmoE01 | 2.60.40.4220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.62 | 50.0 | 5.18e-01 | 100.0% | 96.4% |
| 3dgtA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.62 | 54.0 | 3.89e-01 | 100.0% | 34.2% |
| 3d4eA01 | 3.30.1450.10 | Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › | 0.59 | 30.0 | 3.17e-01 | 90.2% | 51.2% |
| 2it1A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 29.0 | 3.37e-01 | 89.1% | 65.6% |
| 3hrgA02 | 3.30.420.260 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain | 0.58 | 35.0 | 3.31e-01 | 72.8% | 49.1% |
| 2yyoA00 | 2.60.120.920 | Mainly Beta › Sandwich › Jelly Rolls › SPRY domain | 0.56 | 47.0 | 3.94e-01 | 92.4% | 70.0% |
| 7wffb01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.55 | 48.0 | 3.33e-01 | 95.7% | 94.0% |
| 7fisA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.54 | 46.0 | 3.28e-01 | 94.6% | 29.5% |
| 2w5nA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.54 | 45.0 | 3.07e-01 | 93.5% | 43.6% |
| 4a2bA03 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 34.0 | 3.41e-01 | 100.0% | 61.1% |
| 3hn3A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 39.0 | 3.85e-01 | 78.3% | 93.3% |
| 3wt0A02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 39.0 | 3.31e-01 | 79.3% | 75.6% |
| 2i0oA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.52 | 40.0 | 2.95e-01 | 85.9% | 67.9% |
| 3g9kF01 | 3.60.20.40 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Gamma-glutamyltranspeptidase, small (S) subunit | 0.52 | 37.0 | 3.10e-01 | 75.0% | 89.0% |
| 2yeqA01 | 2.60.40.380 | Mainly Beta › Sandwich › Immunoglobulin-like › Purple acid phosphatase-like, N-terminal | 0.52 | 38.0 | 3.67e-01 | 79.3% | 91.7% |
| 4eqaC00 | 2.40.128.650 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 39.0 | 3.39e-01 | 90.2% | 51.3% |
| 1t6cA02 | 3.30.420.150 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 | 0.51 | 35.0 | 2.85e-01 | 71.7% | 38.7% |
| 1y8cA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.51 | 31.0 | 3.62e-01 | 97.8% | 93.3% |
| 3ecrB03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.50 | 39.0 | 3.86e-01 | 93.5% | 77.5% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3333293 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.77 | 38.0 | 4.24e-01 | 85.9% | 60.0% |
| 3953637 | 10.1.1.35 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 | 0.70 | 55.0 | 4.37e-01 | 100.0% | 41.1% |
| 3910488 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.69 | 39.0 | 4.13e-01 | 82.6% | 61.2% |
| 3962291 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.69 | 54.0 | 4.51e-01 | 100.0% | 47.6% |
| 3825518 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.68 | 38.0 | 4.18e-01 | 84.8% | 68.0% |
| 3394892 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.65 | 57.0 | 4.39e-01 | 97.8% | 42.9% |
| 3879945 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.65 | 40.0 | 4.77e-01 | 76.1% | 96.7% |
| 3257266 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.64 | 42.0 | 3.80e-01 | 100.0% | 49.6% |
| 5009351 | 10.1.1.117 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Thermopsin | 0.63 | 55.0 | 4.05e-01 | 95.7% | 40.4% |
| 4026175 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.62 | 46.0 | 3.60e-01 | 95.7% | 35.6% |
| 168847 | 10.1.1.11 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 | 0.62 | 54.0 | 3.91e-01 | 100.0% | 34.8% |
| 1760289 | 809.1.1.3 ↗ | a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › DUF3862 | 0.59 | 30.0 | 3.17e-01 | 90.2% | 51.2% |
| 3494433 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.58 | 38.0 | 3.41e-01 | 82.6% | 48.4% |
| 5047088 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.58 | 47.0 | 3.61e-01 | 89.1% | 42.3% |
| 3316054 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.56 | 47.0 | 3.09e-01 | 93.5% | 34.4% |
| 3309307 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.56 | 47.0 | 2.84e-01 | 93.5% | 21.9% |
| 4980248 | 7089.1.1.0 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD | 0.55 | 33.0 | 3.86e-01 | 94.6% | 91.4% |
| 5021156 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.55 | 46.0 | 3.59e-01 | 91.3% | 46.0% |
| 3461718 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.54 | 41.0 | 3.16e-01 | 93.5% | 33.0% |
| 4243201 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.53 | 47.0 | 3.78e-01 | 100.0% | 68.6% |
| 4230566 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.53 | 40.0 | 2.84e-01 | 79.3% | 87.0% |
| 3336357 | 3794.1.1.4 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › MCCA_BT | 0.53 | 39.0 | 3.19e-01 | 76.1% | 85.5% |
| 3191562 | 5.1.4.229 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_EMC1_N | 0.53 | 44.0 | 2.88e-01 | 93.5% | 36.7% |
| 2320506 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.53 | 41.0 | 3.54e-01 | 94.6% | 52.8% |
| 3900385 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 39.0 | 3.25e-01 | 77.2% | 69.7% |
| 3585491 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.52 | 41.0 | 2.74e-01 | 85.9% | 28.3% |
| 3512065 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.52 | 35.0 | 3.96e-01 | 98.9% | 100.0% |
| 4946228 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 40.0 | 3.64e-01 | 85.9% | 64.6% |
| 3980078 | 274.1.1.24 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSppdC | 0.51 | 34.0 | 3.84e-01 | 79.3% | 90.0% |
| 3421524 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 43.0 | 2.83e-01 | 92.4% | 21.5% |
| 3972316 | 809.1.1.0 ↗ | a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP | 0.51 | 30.0 | 3.48e-01 | 84.8% | 83.1% |
| 5059423 | 244.2.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain | 0.50 | 31.0 | 3.18e-01 | 76.1% | 62.2% |
| 5034804 | 11.1.1.284 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 | 0.50 | 37.0 | 2.88e-01 | 77.2% | 40.0% |
| 3925021 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.50 | 42.0 | 3.73e-01 | 91.3% | 96.3% |
D3
medium
residues 124-249
Domain cluster:
representative