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rifcsplowo2_12_scaffold_23_prodigal-single.1__X__X__00157
Bact-Virrifcsplowo2_12_scaffold_23_prodigal-single.1__X__X__00157
Identity
- Kingdom:
- phage
Quality
68.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 32-179
Domain cluster:
rep: gwa1_scaffold_31_prodigal-single.1__X__X__00054__D30-156
D2
high
residues 245-395
Domain cluster:
rep: NC_023549.1__YP_009004248.1__CN1A_36__00036__D3-130
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02557.23 best | VanY | 74.6 | 9.10e-21 | 75.5% | 90.9% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4mphA00 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.85 | 76.0 | 7.05e-01 | 92.1% | 87.8% |
| 2vo9A01 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.84 | 65.0 | 6.92e-01 | 79.5% | 98.5% |
| 4muqA02 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.83 | 70.0 | 7.17e-01 | 88.1% | 100.0% |
| 5hnmC00 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.81 | 71.0 | 6.67e-01 | 91.4% | 87.1% |
| 6u26A01 | 3.30.70.80 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 | 0.74 | 32.0 | 4.21e-01 | 80.1% | 70.5% |
| 1r44A00 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.74 | 68.0 | 6.11e-01 | 97.4% | 96.5% |
| 4d0yA00 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.73 | 64.0 | 5.92e-01 | 92.1% | 82.6% |
| 1lbuA02 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.71 | 53.0 | 5.69e-01 | 98.0% | 90.7% |
| 2vxzA02 | 1.10.10.1490 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.59 | 26.0 | 3.33e-01 | 81.5% | 70.1% |
| 3dzzA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.54 | 34.0 | 3.51e-01 | 93.4% | 66.2% |
| 2zqeA00 | 3.30.1370.110 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.51 | 27.0 | 3.58e-01 | 80.1% | 96.2% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1297179 | 307.1.1.3 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VanY | 0.86 | 76.0 | 6.66e-01 | 92.7% | 79.3% |
| 1103093 | 307.1.1.3 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VanY | 0.85 | 75.0 | 6.95e-01 | 92.1% | 86.4% |
| 3589476 | 307.1.1.3 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VanY | 0.84 | 75.0 | 6.28e-01 | 92.7% | 88.3% |
| None | — | 0.83 | 67.0 | 6.80e-01 | 83.4% | 95.9% | |
| 2448156 | 307.1.1.6 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15_4 | 0.82 | 67.0 | 6.72e-01 | 84.1% | 94.0% |
| 228616 | 307.1.1.3 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VanY | 0.81 | 72.0 | 5.96e-01 | 93.4% | 89.6% |
| 3282282 | 307.1.1.3 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VanY | 0.81 | 61.0 | 6.58e-01 | 82.8% | 90.0% |
| 3589629 | 307.1.1.3 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VanY | 0.80 | 70.0 | 6.28e-01 | 91.4% | 85.9% |
| 3256406 | 307.1.1.2 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15 | 0.79 | 70.0 | 6.16e-01 | 92.1% | 88.6% |
| 4010530 | 307.1.1.2 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15 | 0.77 | 65.0 | 6.20e-01 | 87.4% | 100.0% |
| 3978719 | 307.1.1.2 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15 | 0.75 | 68.0 | 6.13e-01 | 95.4% | 95.5% |
| 5590 | 307.1.1.2 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15 | 0.74 | 68.0 | 6.11e-01 | 97.4% | 96.5% |
| 1293086 | 307.1.1.3 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VanY | 0.73 | 64.0 | 5.92e-01 | 92.1% | 81.5% |
| 3961855 | 307.1.1.2 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15 | 0.71 | 66.0 | 5.91e-01 | 98.0% | 95.5% |
| 3166153 | 307.1.1.3 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VanY | 0.66 | 53.0 | 5.70e-01 | 94.7% | 96.2% |
| 1497958 | 307.1.1.11 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › PF31190 | 0.65 | 50.0 | 5.23e-01 | 80.1% | 99.3% |
| 3942276 | 307.1.1.8 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15_2 | 0.62 | 48.0 | 4.93e-01 | 82.1% | 96.6% |
| 4338511 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.61 | 29.0 | 3.76e-01 | 84.8% | 79.8% |
| 3948964 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.60 | 29.0 | 3.49e-01 | 84.8% | 68.4% |