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rifcsplowo2_12_scaffold_23_prodigal-single.1__X__X__00201

Bact-Vir

rifcsplowo2_12_scaffold_23_prodigal-single.1__X__X__00201

Identity

Kingdom:
phage

Quality

96.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-163
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12689.14 best Acid_PPase 28.1 2.40e-06 89.4% 68.0%
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u7pD00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.82 74.0 7.44e-01 98.8% 93.2%
3kzxA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.78 61.0 6.55e-01 95.7% 93.5%
3e58B01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.74 64.0 6.68e-01 98.8% 97.3%
2iyeA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.73 57.0 5.85e-01 98.8% 82.8%
3k1zA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.72 63.0 6.45e-01 95.7% 93.6%
1z5gA00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.70 65.0 5.89e-01 98.8% 88.0%
3tnjA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.68 49.0 5.60e-01 94.4% 99.2%
3e8mA00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.68 60.0 6.01e-01 98.8% 91.5%
2rbgA00 3.40.50.11100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.67 50.0 5.58e-01 93.2% 99.2%
6mvtA03 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.63 49.0 4.17e-01 80.7% 88.4%
4nv0A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.63 60.0 5.34e-01 100.0% 90.3%
4gvlA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.63 44.0 4.79e-01 96.3% 85.3%
1qrsA05 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.63 46.0 5.16e-01 90.7% 100.0%
3loqA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.63 47.0 5.23e-01 96.3% 98.4%
2hwyA00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.62 44.0 5.05e-01 96.3% 100.0%
2g07A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.62 56.0 5.30e-01 100.0% 81.8%
2wteA01 3.40.50.11700 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.61 47.0 5.01e-01 93.2% 92.8%
5izdA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.61 50.0 4.13e-01 87.0% 87.0%
1gv4A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 39.0 3.89e-01 82.6% 62.7%
1h2bA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 46.0 4.95e-01 96.9% 92.1%
1ytlA00 3.40.50.1220 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain 0.60 50.0 5.04e-01 100.0% 88.6%
1euhA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.60 49.0 4.14e-01 87.0% 86.9%
6pnuB01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.60 49.0 4.04e-01 87.6% 84.9%
4wnyA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.60 46.0 5.06e-01 95.0% 99.2%
3pqaB01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.59 49.0 4.11e-01 87.6% 90.8%
4i3vA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.59 49.0 4.11e-01 87.6% 87.4%
5o1pA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 48.0 4.71e-01 95.7% 79.2%
2h6eA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 46.0 4.90e-01 96.9% 92.3%
4eexA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 46.0 4.91e-01 96.9% 94.3%
4dvjA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 47.0 4.98e-01 99.4% 93.8%
1lssA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 44.0 4.81e-01 95.7% 94.7%
3oc4A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 37.0 4.20e-01 82.6% 84.2%
3fbgA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 48.0 4.99e-01 99.4% 93.9%
2j8zA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 46.0 4.85e-01 100.0% 92.4%
1a3wA01 3.40.1380.20 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain 0.58 39.0 4.01e-01 96.3% 70.3%
3qwbA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 47.0 4.92e-01 100.0% 94.5%
1jvbA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 46.0 4.86e-01 100.0% 94.3%
3jynA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 47.0 4.92e-01 99.4% 94.5%
1vp4A02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.58 41.0 3.68e-01 73.9% 72.5%
3fwzA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 43.0 4.62e-01 95.7% 89.3%
4gx0B04 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 42.0 4.56e-01 95.7% 92.4%
2v3aA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 37.0 3.98e-01 95.0% 77.0%
6cmzA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 35.0 4.04e-01 82.6% 84.0%
3o0hB02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 35.0 4.04e-01 82.6% 85.5%
3pzgA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.56 51.0 3.96e-01 100.0% 86.6%
2etvA01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.56 45.0 4.76e-01 99.4% 95.8%
1xdiA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 35.0 3.97e-01 83.2% 84.0%
6wb4B01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.55 50.0 4.00e-01 96.3% 82.3%
5x1yA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 36.0 4.01e-01 82.6% 84.4%
4as2A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.55 50.0 4.46e-01 98.1% 94.2%
4a0sA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 47.0 4.92e-01 96.9% 100.0%
2ozlB02 3.40.50.920 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 38.0 4.15e-01 96.3% 87.3%
3lq1A02 3.40.50.1220 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain 0.53 41.0 4.07e-01 100.0% 76.3%
3afmB00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 47.0 4.17e-01 100.0% 90.2%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5065644 2006.1.1.13 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Acid_PPase 0.86 81.0 8.10e-01 96.9% 98.2%
5073238 2006.1.1.13 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Acid_PPase 0.85 78.0 7.88e-01 95.0% 97.5%
4985743 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.84 78.0 7.89e-01 98.1% 96.9%
5010337 2006.1.1.13 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Acid_PPase 0.83 78.0 7.57e-01 96.9% 89.1%
4971662 2006.1.1.13 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Acid_PPase 0.82 77.0 7.75e-01 97.5% 97.5%
135830 2006.1.1.13 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Acid_PPase 0.82 74.0 7.26e-01 99.4% 88.8%
3178002 2006.1.1.13 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Acid_PPase 0.81 78.0 7.51e-01 99.4% 95.5%
3781717 2006.1.1.13 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Acid_PPase 0.80 75.0 7.37e-01 97.5% 93.5%
3178821 2006.1.1.13 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Acid_PPase 0.79 76.0 6.50e-01 100.0% 94.2%
3742261 2006.1.1.13 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Acid_PPase 0.79 74.0 7.31e-01 99.4% 93.5%
3689439 2006.1.1.13 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Acid_PPase 0.78 74.0 6.42e-01 100.0% 91.1%
3947733 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.78 61.0 6.72e-01 89.4% 100.0%
3502769 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.76 64.0 6.85e-01 93.8% 100.0%
5014616 2006.1.1.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.75 69.0 6.16e-01 96.3% 95.8%
5014028 2006.1.1.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.75 68.0 5.96e-01 95.7% 92.2%
5001400 2006.1.1.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.74 69.0 5.84e-01 97.5% 98.4%
5074271 2006.1.1.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.74 69.0 6.03e-01 97.5% 97.4%
3876276 2006.1.1.44 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like 0.74 69.0 5.82e-01 97.5% 93.2%
3824504 2006.1.1.44 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like 0.74 70.0 5.87e-01 99.4% 94.5%
137564 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.73 68.0 6.24e-01 98.8% 95.6%
4956322 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.72 66.0 5.94e-01 96.9% 97.7%
4378066 2006.1.1.10 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NT5C 0.71 66.0 6.16e-01 97.5% 93.3%
5070396 2006.1.1.14 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD 0.70 65.0 5.51e-01 97.5% 83.3%
4932201 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.65 48.0 5.28e-01 95.0% 94.6%
4971715 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.64 48.0 5.30e-01 95.7% 96.2%
3955971 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.64 47.0 5.16e-01 90.7% 93.1%
5055988 2006.1.4.13 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_9 0.63 46.0 5.19e-01 94.4% 100.0%
4930591 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.63 49.0 5.31e-01 96.9% 96.3%
3417516 2003.1.1.53 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NmrA 0.63 47.0 4.91e-01 95.0% 84.8%
4988577 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.63 47.0 5.27e-01 95.0% 100.0%
384421 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.63 47.0 5.17e-01 96.3% 95.5%
4664422 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.62 48.0 5.14e-01 94.4% 94.8%
4947106 7542.1.1.1 a/b three-layered sandwiches › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase 0.62 46.0 4.75e-01 100.0% 80.6%
5039199 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.61 47.0 4.85e-01 96.3% 83.9%
5039083 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.61 46.0 5.14e-01 91.9% 100.0%
5037057 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.61 47.0 5.14e-01 95.7% 97.7%
3970680 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.60 45.0 5.03e-01 93.8% 100.0%
4081900 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.60 47.0 4.73e-01 95.7% 81.9%
2099500 7524.1.1.1 a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh 0.60 47.0 4.03e-01 82.6% 90.5%
1389229 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.59 42.0 4.63e-01 87.6% 92.7%
4964128 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.59 47.0 5.09e-01 93.8% 99.3%
5061123 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.58 37.0 4.03e-01 94.4% 76.9%
5070327 7542.1.1.1 a/b three-layered sandwiches › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase 0.58 46.0 4.66e-01 100.0% 84.4%
4946630 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.58 49.0 5.05e-01 96.3% 94.2%
5072720 7542.1.1.1 a/b three-layered sandwiches › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase 0.57 47.0 4.83e-01 100.0% 92.7%
4942802 7542.1.1.1 a/b three-layered sandwiches › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase 0.57 46.0 4.68e-01 99.4% 87.7%
4973146 7567.1.1.1 a/b three-layered sandwiches › LmbE-like › LmbE-like › LmbE-like › PIG-L 0.57 51.0 4.71e-01 96.3% 96.1%
3714472 2006.1.4.10 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_4 0.55 49.0 4.98e-01 96.9% 98.7%
4928867 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.54 47.0 4.66e-01 96.3% 87.6%
5040958 2003.1.1.28 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › TrkA_N 0.54 40.0 4.38e-01 93.2% 94.6%
5011726 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.53 47.0 3.94e-01 98.8% 63.2%
4933350 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 39.0 4.34e-01 77.0% 100.0%
3664116 2003.1.5.31 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.52 47.0 3.54e-01 100.0% 75.1%
4932583 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.52 40.0 4.06e-01 92.5% 81.0%
4629124 2003.1.7.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › DeoRC 0.51 40.0 3.80e-01 83.2% 97.4%
4955734 2003.1.6.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › Tubulin 0.51 42.0 3.88e-01 88.2% 97.1%