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rifoxya1_full_scaffold_1_prodigal-single.1__X__X__00013
Bact-Virrifoxya1_full_scaffold_1_prodigal-single.1__X__X__00013
Identity
- Kingdom:
- phage
Quality
70.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-74
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1qsdA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.78 | 55.0 | 4.94e-01 | 74.3% | 56.9% |
| 2ic6A00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.77 | 54.0 | 5.55e-01 | 73.0% | 87.3% |
| 1q0gA00 | 1.20.120.400 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nickel-containing superoxide dismutase | 0.75 | 55.0 | 4.62e-01 | 75.7% | 50.4% |
| 1orjD00 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.74 | 53.0 | 4.40e-01 | 74.3% | 46.4% |
| 3fd9A03 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.74 | 51.0 | 5.19e-01 | 71.6% | 79.5% |
| 1nt2B02 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.73 | 52.0 | 5.42e-01 | 74.3% | 80.6% |
| 3fxdC00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.72 | 42.0 | 4.95e-01 | 73.0% | 86.0% |
| 1d9cA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.72 | 47.0 | 4.01e-01 | 93.2% | 41.3% |
| 3if8B02 | 1.20.58.730 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.71 | 47.0 | 4.21e-01 | 71.6% | 50.0% |
| 4n06A02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.71 | 51.0 | 3.47e-01 | 75.7% | 25.4% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.71 | 51.0 | 5.05e-01 | 75.7% | 90.9% |
| 1wpaA01 | 6.10.140.340 | Special › Helix non-globular › Helix Hairpins › | 0.70 | 49.0 | 4.51e-01 | 74.3% | 64.6% |
| 6d5xA00 | 1.20.1200.10 | Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like | 0.70 | 51.0 | 4.00e-01 | 77.0% | 39.7% |
| 4iggA01 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.69 | 48.0 | 5.04e-01 | 74.3% | 85.1% |
| 4adzA00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.66 | 56.0 | 5.24e-01 | 93.2% | 100.0% |
| 7powA01 | 1.20.120.1760 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain | 0.66 | 51.0 | 3.80e-01 | 85.1% | 48.5% |
| 3craB01 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.66 | 55.0 | 5.22e-01 | 91.9% | 77.9% |
| 3nkzA00 | 1.20.58.380 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. | 0.66 | 55.0 | 5.02e-01 | 91.9% | 79.4% |
| 2p61A00 | 1.20.120.490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hypothetical protein TM1646-like domain | 0.65 | 59.0 | 5.06e-01 | 100.0% | 100.0% |
| 4q5nA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.65 | 55.0 | 4.82e-01 | 95.9% | 96.4% |
| 2qupA00 | 1.20.120.490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hypothetical protein TM1646-like domain | 0.64 | 56.0 | 4.80e-01 | 97.3% | 89.9% |
| 2qkdA02 | 2.60.120.1040 | Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain | 0.64 | 45.0 | 3.68e-01 | 74.3% | 57.9% |
| 2e62A01 | 6.10.140.420 | Special › Helix non-globular › Helix Hairpins › | 0.63 | 43.0 | 4.95e-01 | 71.6% | 100.0% |
| 1z0pA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 53.0 | 5.41e-01 | 95.9% | 98.6% |
| 3mq1A01 | 1.20.58.970 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 49.0 | 4.56e-01 | 86.5% | 84.8% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.60 | 42.0 | 4.22e-01 | 74.3% | 74.3% |
| 1txuA01 | 1.10.246.120 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.59 | 44.0 | 4.12e-01 | 89.2% | 63.8% |
| 6axfA01 | 1.20.870.10 | Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 | 0.58 | 45.0 | 3.85e-01 | 82.4% | 70.1% |
| 4agsB04 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.58 | 48.0 | 4.10e-01 | 97.3% | 81.2% |
| 2nr4A02 | 1.20.58.290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. | 0.57 | 38.0 | 4.19e-01 | 87.8% | 89.7% |
| 4k0dA00 | 1.20.120.1730 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.57 | 48.0 | 3.96e-01 | 97.3% | 53.1% |
| 3nynA03 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.57 | 38.0 | 3.78e-01 | 83.8% | 64.2% |
| 1j1jA02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.54 | 45.0 | 4.33e-01 | 91.9% | 80.0% |
| 1x5bA01 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.53 | 42.0 | 3.51e-01 | 87.8% | 68.9% |
| 1floA01 | 3.30.300.80 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › FLP Recombinase, lambda integrase-like, N-terminal domain (domain 1) | 0.53 | 41.0 | 3.74e-01 | 87.8% | 77.1% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4860885 | 633.6.1.6 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › ACAD9-ACADV_C | 0.80 | 58.0 | 5.06e-01 | 74.3% | 53.3% |
| 3228061 | 1147.1.1.1 ↗ | alpha bundles › RNA polymerase II elongation factor ELL2 C-terminal domain › RNA polymerase II elongation factor ELL2 C-terminal domain › RNA polymerase II elongation factor ELL2 C-terminal domain › Occludin_ELL | 0.79 | 57.0 | 4.77e-01 | 77.0% | 46.1% |
| 4129922 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.79 | 56.0 | 5.04e-01 | 74.3% | 56.0% |
| 3738041 | 192.5.1.1 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1 | 0.79 | 55.0 | 5.28e-01 | 74.3% | 63.5% |
| 3167538 | 603.1.1.3 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › V-SNARE | 0.78 | 56.0 | 4.83e-01 | 75.7% | 51.3% |
| 4883406 | 622.4.1.1 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › Blo-t-5 | 0.76 | 54.0 | 4.63e-01 | 74.3% | 56.0% |
| 3643501 | 192.1.1.47 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › DUF641 | 0.76 | 52.0 | 5.53e-01 | 71.6% | 80.0% |
| 315449 | 192.8.1.2 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Hanta_nucleocap | 0.76 | 54.0 | 5.41e-01 | 74.3% | 82.9% |
| 4025445 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.76 | 54.0 | 4.85e-01 | 74.3% | 56.0% |
| 5020412 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.75 | 53.0 | 4.66e-01 | 75.7% | 51.4% |
| 4051951 | 605.2.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 | 0.75 | 53.0 | 5.01e-01 | 74.3% | 62.2% |
| 4652719 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.75 | 53.0 | 4.89e-01 | 74.3% | 58.9% |
| 5041920 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.73 | 52.0 | 4.93e-01 | 75.7% | 72.2% |
| 5006608 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.71 | 49.0 | 4.86e-01 | 73.0% | 70.0% |
| 3597864 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.70 | 61.0 | 5.07e-01 | 95.9% | 100.0% |
| 3307959 | 3835.1.1.3 ↗ | alpha bundles › Type I hyperactive antifreeze protein › Type I hyperactive antifreeze protein › Type I hyperactive antifreeze protein › DUF842 | 0.68 | 47.0 | 4.99e-01 | 71.6% | 83.1% |
| 4816885 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.66 | 48.0 | 4.21e-01 | 78.4% | 56.9% |
| 5023828 | 159.1.1.1 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › MazG | 0.66 | 47.0 | 4.51e-01 | 87.8% | 64.8% |
| 3627953 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.65 | 58.0 | 5.06e-01 | 97.3% | 69.1% |
| 3612915 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.63 | 55.0 | 4.88e-01 | 97.3% | 88.6% |
| 4998672 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.63 | 55.0 | 5.20e-01 | 97.3% | 82.2% |
| 3581466 | 604.12.1.1 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT | 0.61 | 44.0 | 4.30e-01 | 86.5% | 70.0% |
| 3327241 | 604.12.1.13 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › HR_lesion | 0.60 | 46.0 | 4.51e-01 | 93.2% | 77.5% |
| 5038395 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.60 | 52.0 | 4.07e-01 | 97.3% | 48.4% |
| 3696125 | 109.4.1.177 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cnd3 | 0.59 | 50.0 | 3.22e-01 | 97.3% | 50.8% |
| 3527051 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.58 | 49.0 | 4.57e-01 | 97.3% | 74.7% |
| 4891181 | 7516.1.1.26 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_tranf_2_3 | 0.58 | 49.0 | 3.11e-01 | 97.3% | 48.2% |
| 3901696 | 192.8.1.240 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › HR1 | 0.54 | 48.0 | 4.61e-01 | 97.3% | 96.5% |