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rifoxya1_full_scaffold_1_prodigal-single.1__X__X__00014
Bact-Virrifoxya1_full_scaffold_1_prodigal-single.1__X__X__00014
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-97_109-123
Domain cluster:
rep: BML_08042016_6_5m_scaffold_2_prodigal-single.1__X__X__00068__D62-142
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3in6A02 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.68 | 62.0 | 5.89e-01 | 99.0% | 94.0% |
| 5c71A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.68 | 43.0 | 4.46e-01 | 80.0% | 67.7% |
| 1flmA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.66 | 60.0 | 5.63e-01 | 100.0% | 86.9% |
| 2kvoA01 | 2.40.30.220 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Photosystem II Psb28 | 0.65 | 52.0 | 5.14e-01 | 98.0% | 82.7% |
| 2x8kA01 | 2.40.30.200 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.65 | 57.0 | 5.65e-01 | 98.0% | 91.4% |
| 2xwxA03 | 2.60.40.2550 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.63 | 41.0 | 4.17e-01 | 80.0% | 67.3% |
| 2k4qA00 | 4.10.410.40 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › | 0.62 | 54.0 | 4.69e-01 | 97.0% | 85.9% |
| 5gxuB01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.61 | 43.0 | 4.06e-01 | 93.0% | 59.8% |
| 2ptfA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.61 | 55.0 | 4.84e-01 | 99.0% | 80.3% |
| 2cy5A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.61 | 37.0 | 3.44e-01 | 98.0% | 48.1% |
| 4ci2B02 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.60 | 48.0 | 4.46e-01 | 92.0% | 68.0% |
| 2ok7A01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.59 | 46.0 | 4.47e-01 | 93.0% | 74.1% |
| 3bgaA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 43.0 | 4.17e-01 | 80.0% | 67.6% |
| 4fg9A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.59 | 37.0 | 4.09e-01 | 96.0% | 79.7% |
| 5c94A00 | 2.40.10.250 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 | 0.58 | 44.0 | 4.25e-01 | 97.0% | 69.8% |
| 3d3lA02 | 3.10.450.60 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 33.0 | 3.60e-01 | 100.0% | 68.8% |
| 2v9kA04 | 3.30.70.3190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 39.0 | 3.86e-01 | 70.0% | 100.0% |
| 1ddgA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.57 | 40.0 | 3.88e-01 | 94.0% | 64.9% |
| 1r3eA01 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.56 | 42.0 | 3.36e-01 | 81.0% | 57.9% |
| 1k8wA01 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.55 | 41.0 | 3.19e-01 | 80.0% | 52.7% |
| 1e62A01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.55 | 46.0 | 4.25e-01 | 93.0% | 71.9% |
| 1n08A00 | 2.40.30.30 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like | 0.55 | 45.0 | 4.00e-01 | 93.0% | 78.6% |
| 1ejfA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 41.0 | 4.00e-01 | 89.0% | 72.7% |
| 2gjvA00 | 3.30.2000.10 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like | 0.53 | 47.0 | 4.26e-01 | 98.0% | 89.7% |
| 2kmwA01 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 41.0 | 4.07e-01 | 90.0% | 77.9% |
| 3njaA02 | 2.10.70.100 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.53 | 26.0 | 3.39e-01 | 77.0% | 95.7% |
| 4c2mA09 | 3.30.70.2850 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 43.0 | 3.60e-01 | 90.0% | 86.8% |
| 3icyA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 34.0 | 3.29e-01 | 99.0% | 55.9% |
| 4m4xA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 38.0 | 3.58e-01 | 78.0% | 94.4% |
| 4oo0B00 | 3.90.950.10 | Alpha Beta › Alpha-Beta Complex › Maf protein › | 0.52 | 45.0 | 3.61e-01 | 98.0% | 49.5% |
| 5cwaA00 | 3.60.120.10 | Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase | 0.51 | 46.0 | 2.94e-01 | 100.0% | 83.2% |
| 3lifA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 39.0 | 4.14e-01 | 82.0% | 100.0% |
| 1vi7A01 | 3.30.230.30 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › Impact, N-terminal domain | 0.51 | 41.0 | 3.69e-01 | 85.0% | 72.6% |
| 3vskA01 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.51 | 37.0 | 3.39e-01 | 77.0% | 85.0% |
ECOD (58)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4995815 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.79 | 74.0 | 6.80e-01 | 100.0% | 80.0% |
| 5041372 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.76 | 63.0 | 6.64e-01 | 96.0% | 97.8% |
| 4393593 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.75 | 66.0 | 6.81e-01 | 100.0% | 100.0% |
| 4141852 | 1.1.13.56 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › YQBQ | 0.75 | 61.0 | 6.53e-01 | 95.0% | 100.0% |
| 3964308 | 1.1.13.37 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2163 | 0.74 | 67.0 | 6.02e-01 | 98.0% | 93.3% |
| 3977382 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.74 | 64.0 | 6.61e-01 | 95.0% | 100.0% |
| 3976188 | 1.1.13.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tube | 0.73 | 66.0 | 5.58e-01 | 100.0% | 86.7% |
| 3936663 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.73 | 62.0 | 5.74e-01 | 92.0% | 77.6% |
| 4057590 | 1.1.5.86 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN3 | 0.72 | 63.0 | 5.61e-01 | 100.0% | 67.1% |
| 4247994 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.72 | 63.0 | 6.40e-01 | 95.0% | 100.0% |
| 4033712 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.72 | 58.0 | 6.20e-01 | 91.0% | 100.0% |
| 3924486 | 2004.1.1.184 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 | 0.72 | 61.0 | 3.85e-01 | 92.0% | 20.0% |
| 4957565 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.72 | 63.0 | 5.86e-01 | 96.0% | 98.4% |
| 2137681 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.72 | 55.0 | 5.42e-01 | 99.0% | 75.2% |
| 5078836 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.71 | 64.0 | 6.27e-01 | 100.0% | 95.5% |
| 3288253 | 1.1.13.55 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF4873 | 0.70 | 54.0 | 5.63e-01 | 97.0% | 90.0% |
| 4878666 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.69 | 63.0 | 5.65e-01 | 100.0% | 97.8% |
| 3785886 | 1.1.5.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › FMN_bind_2 | 0.68 | 62.0 | 4.89e-01 | 100.0% | 73.7% |
| 184986 | 1.1.13.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail | 0.68 | 61.0 | 5.67e-01 | 98.0% | 98.4% |
| 3282756 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.65 | 59.0 | 5.32e-01 | 99.0% | 87.4% |
| 4344991 | 1.1.5.35 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › YwpF | 0.65 | 58.0 | 5.32e-01 | 99.0% | 76.2% |
| 3535347 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.65 | 54.0 | 5.22e-01 | 92.0% | 85.2% |
| 5002457 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.64 | 58.0 | 5.45e-01 | 100.0% | 89.4% |
| 4402197 | 11.1.1.236 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Mannosidase_ig | 0.61 | 41.0 | 4.28e-01 | 79.0% | 72.6% |
| 4019584 | 11.1.1.236 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Mannosidase_ig | 0.61 | 42.0 | 4.31e-01 | 96.0% | 73.7% |
| 3305089 | 1.1.7.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_1 | 0.59 | 45.0 | 3.92e-01 | 93.0% | 52.3% |
| 3830759 | 11.1.1.122 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GO-like_E_set | 0.58 | 43.0 | 4.16e-01 | 90.0% | 69.1% |
| 5024522 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.58 | 50.0 | 4.26e-01 | 97.0% | 70.3% |
| 3846967 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 37.0 | 3.65e-01 | 78.0% | 61.9% |
| 3419970 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.57 | 50.0 | 4.20e-01 | 98.0% | 58.3% |
| 1063090 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.57 | 47.0 | 4.25e-01 | 93.0% | 65.5% |
| 3934458 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 38.0 | 3.96e-01 | 78.0% | 72.6% |
| 4091836 | 1.1.7.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_1 | 0.56 | 46.0 | 4.17e-01 | 99.0% | 65.2% |
| 3220081 | 304.102.1.7 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C | 0.56 | 42.0 | 3.18e-01 | 80.0% | 54.4% |
| 4593266 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.56 | 29.0 | 3.22e-01 | 92.0% | 61.3% |
| 3501988 | 304.102.1.7 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C | 0.56 | 41.0 | 3.14e-01 | 79.0% | 52.7% |
| 5019301 | 304.102.1.13 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_C_2 | 0.56 | 41.0 | 3.17e-01 | 80.0% | 37.2% |
| 3805340 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.56 | 46.0 | 4.24e-01 | 93.0% | 70.0% |
| 4935771 | 304.8.1.121 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Pus10_C | 0.55 | 41.0 | 3.17e-01 | 80.0% | 54.7% |
| 4591715 | 304.102.1.5 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,DKCLD,TruB_C_2 | 0.55 | 42.0 | 3.24e-01 | 81.0% | 39.6% |
| 4933784 | 304.102.1.7 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C | 0.55 | 41.0 | 3.26e-01 | 80.0% | 61.0% |
| 4275176 | 304.102.1.5 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,DKCLD,TruB_C_2 | 0.55 | 41.0 | 3.23e-01 | 80.0% | 40.4% |
| 4631198 | 1.1.5.44 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › SecDF_P1_head | 0.55 | 48.0 | 4.61e-01 | 98.0% | 86.1% |
| 3602252 | 325.1.7.7 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › DUF2118 | 0.54 | 38.0 | 4.28e-01 | 73.0% | 93.7% |
| None | — | 0.54 | 48.0 | 4.04e-01 | 98.0% | 82.8% | |
| 5001314 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.54 | 41.0 | 3.14e-01 | 81.0% | 38.4% |
| 1815427 | 319.3.1.1 ↗ | beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ › AMIN | 0.54 | 41.0 | 4.01e-01 | 94.0% | 74.1% |
| 5033279 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.53 | 39.0 | 3.06e-01 | 80.0% | 38.7% |
| 3174289 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.53 | 43.0 | 4.57e-01 | 90.0% | 98.9% |
| 3490554 | 319.1.1.3 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS | 0.53 | 40.0 | 3.79e-01 | 97.0% | 67.5% |
| 4077036 | 304.102.1.6 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 | 0.52 | 39.0 | 3.12e-01 | 81.0% | 40.9% |
| 3664467 | 11.1.1.122 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GO-like_E_set | 0.52 | 43.0 | 3.99e-01 | 90.0% | 71.5% |
| 5079471 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 38.0 | 3.78e-01 | 85.0% | 73.3% |
| 3399963 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.52 | 39.0 | 3.70e-01 | 89.0% | 65.8% |
| 3253595 | 3794.1.1.0 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit | 0.52 | 38.0 | 3.35e-01 | 79.0% | 72.9% |
| 3784088 | 331.3.1.30 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF3074 | 0.52 | 46.0 | 3.55e-01 | 99.0% | 76.8% |
| 4268363 | 11.1.1.142 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DsbD_N | 0.51 | 42.0 | 4.02e-01 | 94.0% | 76.5% |
| 3518863 | 221.1.2.16 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › MTRES1_C | 0.51 | 35.0 | 3.52e-01 | 72.0% | 100.0% |
D2
high
residues 126-212
Domain cluster:
rep: IMGVR_UViG_3300010356_003928-3300010356-Ga0116237_1000366617__D1016-1097
D3
high
residues 214-259_345-409
Domain cluster:
rep: LC121084.1__BAU40030.1__X__00072__D216-246_336-411
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2p5zX01 | 2.30.110.50 | Mainly Beta › Roll › Pnp Oxidase; Chain A › | 0.77 | 53.0 | 4.59e-01 | 94.6% | 47.6% |
| 1k28D03 | 2.40.30.150 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 | 0.74 | 58.0 | 6.24e-01 | 98.2% | 94.7% |
| 4p02A03 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.66 | 48.0 | 4.66e-01 | 89.2% | 68.9% |
| 3eaaA00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.65 | 57.0 | 4.97e-01 | 94.6% | 75.3% |
| 4uhvA01 | 2.30.110.50 | Mainly Beta › Roll › Pnp Oxidase; Chain A › | 0.62 | 51.0 | 4.24e-01 | 98.2% | 50.8% |
| 1rkuA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.60 | 38.0 | 3.86e-01 | 72.1% | 64.0% |
| 3dnfA03 | 3.40.1010.20 | Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, catalytic domain | 0.59 | 39.0 | 4.16e-01 | 92.8% | 75.8% |
| 5ejlA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.59 | 47.0 | 4.58e-01 | 87.4% | 76.6% |
| 1mdbA01 | 3.40.50.980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 39.0 | 3.44e-01 | 73.0% | 48.7% |
| 3q0bX00 | 2.30.280.10 | Mainly Beta › Roll › PUA domain-like › SRA-YDG | 0.56 | 50.0 | 4.59e-01 | 98.2% | 93.2% |
| 2couA01 | 3.40.50.10190 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain | 0.55 | 31.0 | 3.35e-01 | 93.7% | 64.0% |
| 1dc7A00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 36.0 | 3.49e-01 | 93.7% | 58.1% |
| 1dcfA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 37.0 | 3.50e-01 | 92.8% | 57.1% |
| 3w7bA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.53 | 33.0 | 3.67e-01 | 80.2% | 78.4% |
| 4xa8A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 36.0 | 3.59e-01 | 94.6% | 66.1% |
| 1blxA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 37.0 | 4.06e-01 | 89.2% | 88.0% |
| 2ptfA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 43.0 | 3.97e-01 | 89.2% | 77.6% |
| 1zczA01 | 3.40.50.1380 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Methylglyoxal synthase-like domain | 0.52 | 35.0 | 3.20e-01 | 70.3% | 71.2% |
| 5f2kB02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 41.0 | 3.40e-01 | 88.3% | 83.6% |
| 5d6nA00 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.51 | 42.0 | 2.79e-01 | 89.2% | 74.4% |
| 2ausC02 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.51 | 36.0 | 3.07e-01 | 91.0% | 42.7% |
| 7zgmA01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.50 | 41.0 | 3.20e-01 | 88.3% | 76.6% |
| 3rqiA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.50 | 34.0 | 3.33e-01 | 70.3% | 77.2% |
| 3hn0A02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.50 | 33.0 | 3.51e-01 | 73.9% | 76.5% |
ECOD (54)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3981227 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.87 | 58.0 | 7.01e-01 | 99.1% | 100.0% |
| 4995816 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.82 | 64.0 | 6.95e-01 | 94.6% | 94.7% |
| 5062396 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.81 | 57.0 | 5.24e-01 | 72.1% | 97.1% |
| 3059161 | 1.1.13.30 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › E217_GP41 | 0.81 | 57.0 | 6.55e-01 | 100.0% | 97.6% |
| 4957568 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.80 | 59.0 | 6.67e-01 | 98.2% | 98.8% |
| 5002753 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.80 | 59.0 | 6.67e-01 | 97.3% | 98.8% |
| 3943170 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.77 | 59.0 | 6.54e-01 | 100.0% | 97.8% |
| 3909822 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.73 | 51.0 | 5.16e-01 | 72.1% | 86.4% |
| 3944430 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.71 | 58.0 | 6.01e-01 | 100.0% | 91.4% |
| 5056723 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.71 | 44.0 | 4.71e-01 | 72.1% | 72.6% |
| 3966429 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.70 | 51.0 | 5.67e-01 | 92.8% | 93.3% |
| 3943689 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.69 | 58.0 | 5.84e-01 | 99.1% | 89.1% |
| 3971461 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.68 | 43.0 | 4.72e-01 | 70.3% | 77.8% |
| 1914511 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.68 | 50.0 | 4.84e-01 | 86.5% | 67.7% |
| 4606765 | 1.1.7.91 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 | 0.67 | 45.0 | 4.58e-01 | 73.0% | 69.1% |
| 3972305 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.67 | 51.0 | 5.61e-01 | 88.3% | 98.9% |
| 4062509 | 1.1.7.91 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 | 0.66 | 46.0 | 4.73e-01 | 72.1% | 75.2% |
| 4393593 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.66 | 52.0 | 5.58e-01 | 89.2% | 95.8% |
| 4059301 | 1.1.13.47 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_like | 0.66 | 56.0 | 5.64e-01 | 89.2% | 97.3% |
| 4888819 | 1.1.13.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage-tail_1 | 0.66 | 53.0 | 5.31e-01 | 95.5% | 83.8% |
| 3968713 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.65 | 50.0 | 5.52e-01 | 84.7% | 100.0% |
| 4441129 | 1.1.7.91 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 | 0.64 | 45.0 | 4.42e-01 | 72.1% | 66.7% |
| 4273561 | 1.1.7.91 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 | 0.64 | 45.0 | 4.25e-01 | 73.0% | 64.4% |
| 3966280 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.64 | 50.0 | 5.34e-01 | 82.0% | 100.0% |
| 3586477 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.64 | 56.0 | 4.78e-01 | 94.6% | 93.1% |
| 4247994 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.63 | 51.0 | 5.43e-01 | 93.7% | 95.0% |
| 4319057 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.63 | 49.0 | 4.89e-01 | 87.4% | 79.1% |
| 4009379 | 2007.1.3.7 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › RcsC | 0.63 | 33.0 | 3.27e-01 | 71.2% | 45.8% |
| 4551243 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.62 | 48.0 | 4.61e-01 | 86.5% | 71.2% |
| 2642579 | 1.1.13.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 | 0.62 | 51.0 | 4.84e-01 | 87.4% | 94.6% |
| 4562905 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.62 | 49.0 | 4.77e-01 | 87.4% | 75.2% |
| 2674670 | 1.1.13.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 | 0.62 | 50.0 | 4.32e-01 | 87.4% | 75.6% |
| 4446244 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.60 | 38.0 | 3.48e-01 | 71.2% | 47.6% |
| 4938551 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.60 | 44.0 | 4.84e-01 | 93.7% | 95.6% |
| 3535347 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.60 | 50.0 | 4.93e-01 | 92.8% | 85.2% |
| 5002750 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.60 | 48.0 | 4.97e-01 | 94.6% | 91.4% |
| 4094235 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.59 | 47.0 | 4.56e-01 | 87.4% | 75.2% |
| 3657215 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.59 | 38.0 | 3.05e-01 | 71.2% | 33.8% |
| 4036001 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.58 | 39.0 | 3.34e-01 | 72.1% | 42.8% |
| 4810019 | 1.1.13.57 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF30637 | 0.58 | 45.0 | 4.60e-01 | 93.7% | 85.5% |
| 5061311 | 328.5.1.6 ↗ | a+b two layers › IF3-like › SirA-like › SirA-like › DUF2249 | 0.56 | 35.0 | 4.30e-01 | 88.3% | 100.0% |
| 4964155 | 1.1.9.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › SRA_ScoMcrA | 0.56 | 50.0 | 4.61e-01 | 97.3% | 95.7% |
| 3451490 | 1.1.9.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › SAD_SRA | 0.55 | 48.0 | 3.87e-01 | 95.5% | 68.8% |
| 3739968 | 314.1.1.6 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB | 0.54 | 44.0 | 3.39e-01 | 86.5% | 73.1% |
| 4033579 | 1.1.13.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail | 0.54 | 47.0 | 4.52e-01 | 95.5% | 96.8% |
| 3836146 | 1.1.9.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › SAD_SRA | 0.54 | 46.0 | 4.27e-01 | 94.6% | 81.4% |
| 5058399 | 256.1.1.1 ↗ | a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › Archease | 0.53 | 33.0 | 3.13e-01 | 99.1% | 52.3% |
| 3400743 | 314.1.1.6 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB | 0.53 | 43.0 | 3.19e-01 | 86.5% | 78.2% |
| None | — | 0.52 | 37.0 | 2.78e-01 | 73.9% | 31.2% | |
| 4952239 | 7584.1.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › AMP-binding | 0.52 | 37.0 | 3.15e-01 | 73.9% | 49.7% |
| 3678951 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.51 | 41.0 | 3.22e-01 | 85.6% | 67.2% |
| 3962432 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.51 | 33.0 | 3.02e-01 | 72.1% | 48.0% |
| 3807657 | 304.102.1.6 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 | 0.51 | 40.0 | 3.12e-01 | 85.6% | 63.2% |
| 5060110 | 304.102.1.3 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 | 0.50 | 41.0 | 3.08e-01 | 88.3% | 46.8% |
D4
high
residues 261-342
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1hezE00 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.58 | 30.0 | 3.37e-01 | 78.0% | 63.9% |
| 7vtgA01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.57 | 51.0 | 3.48e-01 | 100.0% | 82.3% |
| 1y13A00 | 3.30.479.10 | Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD | 0.54 | 44.0 | 3.55e-01 | 89.0% | 71.8% |
| 1tyyA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.54 | 46.0 | 3.20e-01 | 98.8% | 81.8% |
| 5zliA01 | 3.10.20.70 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Glutamine synthetase, N-terminal domain | 0.52 | 40.0 | 3.69e-01 | 81.7% | 84.0% |
| 1ttnA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.52 | 27.0 | 2.89e-01 | 78.0% | 52.7% |
| 4gs5A01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.52 | 40.0 | 2.88e-01 | 95.1% | 28.3% |
| 2aj4B01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.51 | 42.0 | 3.08e-01 | 95.1% | 41.9% |
| 7k7yG02 | 1.20.1120.10 | Mainly Alpha › Up-down Bundle › "Clostridium botulinum neurotoxin B, ""coiled-coil"" domain" › "Clostridium botulinum neurotoxin b, ""coiled-coil"" domain" | 0.50 | 36.0 | 2.38e-01 | 76.8% | 86.6% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3253966 | 239.4.1.2 ↗ | beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain › GSIII_N | 0.58 | 43.0 | 3.55e-01 | 79.3% | 68.7% |
| 4052917 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.53 | 43.0 | 2.98e-01 | 92.7% | 92.8% |
| 3258650 | 239.4.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain | 0.53 | 40.0 | 4.11e-01 | 79.3% | 92.3% |
| 4927129 | 239.4.1.1 ↗ | beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain › Gln-synt_N | 0.52 | 40.0 | 3.71e-01 | 80.5% | 87.0% |
| 4946703 | 239.4.1.4 ↗ | beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain › Gln-synt_C | 0.52 | 38.0 | 3.86e-01 | 76.8% | 100.0% |
| 3165815 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.51 | 41.0 | 2.87e-01 | 92.7% | 94.9% |
| 4972579 | 239.4.1.1 ↗ | beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain › Gln-synt_N | 0.51 | 41.0 | 3.87e-01 | 87.8% | 93.0% |
| 4951924 | 239.4.1.1 ↗ | beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain › Gln-synt_N | 0.51 | 40.0 | 3.61e-01 | 85.4% | 80.9% |
| 5024396 | 239.4.1.1 ↗ | beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain › Gln-synt_N | 0.51 | 40.0 | 3.75e-01 | 84.1% | 92.0% |
| 2391550 | 239.4.1.1 ↗ | beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain › Gln-synt_N | 0.50 | 39.0 | 3.63e-01 | 84.1% | 83.2% |
| 2557339 | 239.4.1.1 ↗ | beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain › Gln-synt_N | 0.50 | 41.0 | 3.73e-01 | 87.8% | 83.3% |