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rifoxya1_full_scaffold_1_prodigal-single.1__X__X__00030
Bact-Virrifoxya1_full_scaffold_1_prodigal-single.1__X__X__00030
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 33-73_89-231
Domain cluster:
rep: IMGVR_UViG_3300028797_000097-3300028797-Ga0265301_10000033132__D7-193
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4wxaA00 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.64 | 21.0 | 3.09e-01 | 100.0% | 63.1% |
| 2iabA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.60 | 37.0 | 4.21e-01 | 90.2% | 79.7% |
| 2gujA01 | 2.30.110.40 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Phage tail tube protein | 0.59 | 40.0 | 4.64e-01 | 90.2% | 94.7% |
| 1bdfA01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.59 | 27.0 | 3.52e-01 | 71.2% | 73.6% |
| 2qckA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 39.0 | 4.25e-01 | 97.3% | 88.7% |
| 2raqA01 | 3.30.70.1340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MTH889-like domain | 0.54 | 23.0 | 3.15e-01 | 79.3% | 77.6% |
| 3pftA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 39.0 | 4.23e-01 | 97.3% | 87.2% |
| 2r0xA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 39.0 | 4.22e-01 | 97.3% | 87.8% |
| 4l82A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 39.0 | 4.21e-01 | 97.3% | 87.8% |
| 3nfwA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 39.0 | 3.99e-01 | 97.3% | 77.1% |
| 1rz1A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 38.0 | 4.16e-01 | 97.8% | 88.2% |
| 2ifgA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 23.0 | 3.10e-01 | 75.0% | 77.8% |
| 2nr4A01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 34.0 | 3.95e-01 | 91.8% | 90.2% |
| 4f07E00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 37.0 | 4.06e-01 | 96.2% | 89.9% |
| 2ecuA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 35.0 | 3.85e-01 | 97.8% | 86.6% |
| 1k8kD01 | 3.30.1460.20 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.51 | 29.0 | 3.22e-01 | 92.9% | 67.5% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4995820 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.88 | 61.0 | 7.25e-01 | 89.1% | 99.2% |
| 4140243 | 1.1.5.82 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF2001 | 0.82 | 48.0 | 6.08e-01 | 89.1% | 93.0% |
| 3581358 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.80 | 59.0 | 6.45e-01 | 89.7% | 89.7% |
| 2101663 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.80 | 61.0 | 6.46e-01 | 86.4% | 87.7% |
| 4995819 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.80 | 62.0 | 6.90e-01 | 89.7% | 98.7% |
| 2471641 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.75 | 52.0 | 5.81e-01 | 90.2% | 87.9% |
| 2832217 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.74 | 53.0 | 5.99e-01 | 89.7% | 93.7% |
| 2471637 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.74 | 54.0 | 5.99e-01 | 90.2% | 92.6% |
| 3023894 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.72 | 53.0 | 5.92e-01 | 87.0% | 92.6% |
| 2832216 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.72 | 54.0 | 5.95e-01 | 88.0% | 93.5% |
| 3096576 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.72 | 53.0 | 5.69e-01 | 88.0% | 86.8% |
| 3977123 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.65 | 48.0 | 5.19e-01 | 91.8% | 88.7% |
| 4131100 | 1.1.7.87 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 | 0.63 | 32.0 | 3.73e-01 | 73.9% | 66.7% |
| 5047612 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.62 | 20.0 | 3.13e-01 | 82.6% | 69.3% |
| 3589778 | 1.1.5.78 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_TTP_1 | 0.61 | 50.0 | 5.24e-01 | 94.6% | 92.9% |
| 3590380 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.61 | 52.0 | 5.28e-01 | 95.1% | 91.7% |
| 5054097 | 305.1.1.10 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › PF27806 | 0.60 | 25.0 | 3.48e-01 | 91.3% | 78.8% |
| 3265120 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.59 | 47.0 | 4.84e-01 | 94.0% | 86.9% |
| 3252646 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.59 | 38.0 | 4.27e-01 | 89.1% | 84.3% |
| 5034617 | 304.55.2.1 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like › Y1_Tnp | 0.55 | 27.0 | 3.70e-01 | 83.2% | 93.3% |
| 3724051 | 6044.1.1.0 ↗ | a+b three layers › DUF1827-like › DUF1827-like › DUF1827-like | 0.51 | 29.0 | 3.76e-01 | 79.9% | 97.1% |