←Back to structures
rifoxya1_full_scaffold_1_prodigal-single.1__X__X__00031
Bact-Virrifoxya1_full_scaffold_1_prodigal-single.1__X__X__00031
Identity
- Kingdom:
- phage
Quality
80.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-92
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3s9xA00 | 3.10.400.10 | Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase | 0.76 | 69.0 | 5.57e-01 | 100.0% | 74.8% |
| 3a5zB01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 37.0 | 4.23e-01 | 71.8% | 66.7% |
| 1s04A00 | 2.30.130.30 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. | 0.71 | 63.0 | 5.84e-01 | 100.0% | 92.7% |
| 2jiiA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.71 | 36.0 | 3.34e-01 | 75.3% | 38.2% |
| 3oyyA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 37.0 | 4.10e-01 | 72.9% | 63.6% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 36.0 | 4.02e-01 | 72.9% | 62.3% |
| 3bh7B02 | 3.30.70.141 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleoside diphosphate kinase-like domain | 0.66 | 52.0 | 4.65e-01 | 85.9% | 61.2% |
| 1vl7A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.65 | 57.0 | 4.96e-01 | 100.0% | 88.9% |
| 3vpbE00 | 2.20.28.160 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.63 | 33.0 | 3.94e-01 | 97.6% | 76.8% |
| 8igrI01 | 2.40.270.10 | Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 | 0.62 | 50.0 | 3.89e-01 | 85.9% | 99.4% |
| 3djdB02 | 3.30.9.10 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 | 0.61 | 37.0 | 2.87e-01 | 85.9% | 26.5% |
| 2kw8A00 | 2.40.260.10 | Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase | 0.60 | 53.0 | 4.36e-01 | 100.0% | 69.6% |
| 3cpfA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 30.0 | 3.31e-01 | 71.8% | 58.5% |
| 1yzhB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 49.0 | 3.82e-01 | 98.8% | 81.1% |
| 1sjgA00 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.58 | 31.0 | 2.81e-01 | 100.0% | 38.4% |
| 1ow1A00 | 2.40.290.10 | Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › | 0.54 | 47.0 | 3.84e-01 | 100.0% | 93.4% |
| 2p7iA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 49.0 | 3.53e-01 | 98.8% | 88.9% |
| 1e0bA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.53 | 23.0 | 2.68e-01 | 100.0% | 50.8% |
| 1p91B00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 40.0 | 2.84e-01 | 97.6% | 26.7% |
| 5mghA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.52 | 46.0 | 3.19e-01 | 100.0% | 68.4% |
| 3h35A00 | 3.30.110.190 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › | 0.52 | 45.0 | 3.87e-01 | 100.0% | 78.5% |
| 2kwbA00 | 2.170.150.10 | Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A | 0.52 | 44.0 | 3.46e-01 | 94.1% | 77.6% |
| 3bkwB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 45.0 | 3.32e-01 | 98.8% | 66.2% |
ECOD (52)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4913414 | 1.1.16.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain | 0.81 | 46.0 | 4.27e-01 | 84.7% | 46.2% |
| 4889079 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.81 | 46.0 | 4.27e-01 | 84.7% | 46.2% |
| 3356712 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.77 | 40.0 | 5.29e-01 | 70.6% | 95.6% |
| 3817355 | 1.1.9.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH | 0.77 | 71.0 | 6.09e-01 | 100.0% | 76.9% |
| 3653680 | 1.1.9.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH | 0.77 | 70.0 | 5.35e-01 | 100.0% | 52.6% |
| 5021656 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.73 | 42.0 | 5.31e-01 | 84.7% | 98.0% |
| 4999024 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.72 | 65.0 | 4.96e-01 | 100.0% | 83.9% |
| 4104219 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.71 | 37.0 | 4.19e-01 | 71.8% | 66.2% |
| 3598222 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 39.0 | 4.26e-01 | 71.8% | 65.7% |
| 4466667 | 1.1.7.95 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25990 | 0.69 | 61.0 | 5.54e-01 | 97.6% | 75.7% |
| 5021621 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.68 | 60.0 | 5.12e-01 | 96.5% | 85.9% |
| 5032025 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.68 | 56.0 | 5.27e-01 | 97.6% | 73.3% |
| 4949945 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.68 | 60.0 | 5.19e-01 | 97.6% | 90.0% |
| 4967879 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.67 | 61.0 | 5.90e-01 | 100.0% | 92.6% |
| 4997059 | 4.1.1.139 ↗ | beta barrels › SH3 › SH3 › SH3 › IF5A-like_N | 0.66 | 37.0 | 3.94e-01 | 72.9% | 62.7% |
| 3942243 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.65 | 58.0 | 4.96e-01 | 100.0% | 64.3% |
| 2674741 | 4.1.1.32 ↗ | beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID | 0.64 | 34.0 | 4.01e-01 | 72.9% | 76.4% |
| 4268592 | 2003.1.5.23 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_4 | 0.61 | 53.0 | 4.10e-01 | 98.8% | 85.0% |
| 4947785 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.61 | 45.0 | 4.92e-01 | 100.0% | 94.2% |
| 5015822 | 1.1.7.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel | 0.60 | 51.0 | 4.68e-01 | 97.6% | 70.0% |
| 4988604 | 1.1.7.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel | 0.59 | 51.0 | 4.66e-01 | 97.6% | 70.9% |
| 4192972 | 1.1.7.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel | 0.59 | 51.0 | 4.72e-01 | 97.6% | 74.3% |
| 5035871 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.59 | 42.0 | 4.10e-01 | 100.0% | 67.4% |
| 4956935 | 1.1.7.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel | 0.59 | 52.0 | 4.75e-01 | 97.6% | 73.6% |
| 5011662 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.58 | 52.0 | 4.28e-01 | 97.6% | 69.3% |
| 1414910 | 1.1.7.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel | 0.58 | 50.0 | 4.62e-01 | 97.6% | 73.6% |
| 4943928 | 1.1.7.140 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF87 | 0.58 | 52.0 | 4.50e-01 | 97.6% | 73.8% |
| 4989950 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.57 | 51.0 | 4.61e-01 | 97.6% | 74.8% |
| 4978132 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.57 | 52.0 | 4.51e-01 | 97.6% | 68.8% |
| 5028172 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.57 | 51.0 | 4.52e-01 | 97.6% | 71.7% |
| 5023511 | 1.1.7.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel | 0.56 | 51.0 | 4.55e-01 | 97.6% | 72.2% |
| 4950972 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.56 | 50.0 | 4.63e-01 | 100.0% | 76.4% |
| 4989873 | 1.1.7.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel | 0.56 | 50.0 | 4.45e-01 | 97.6% | 72.5% |
| 5051927 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.56 | 51.0 | 4.46e-01 | 97.6% | 73.3% |
| 3998265 | 331.3.1.4 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › IP_trans | 0.55 | 46.0 | 3.35e-01 | 94.1% | 71.2% |
| 3288923 | 2003.1.5.46 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS | 0.55 | 49.0 | 3.60e-01 | 100.0% | 37.8% |
| 3971846 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.55 | 49.0 | 4.36e-01 | 100.0% | 86.7% |
| 3580020 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.54 | 48.0 | 3.72e-01 | 100.0% | 81.0% |
| 4335295 | 11.1.1.322 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ITGAX-like_Ig_3 | 0.53 | 48.0 | 4.28e-01 | 100.0% | 88.3% |
| 3974807 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.53 | 48.0 | 4.21e-01 | 100.0% | 81.6% |
| None | — | 0.53 | 47.0 | 4.02e-01 | 97.6% | 65.9% | |
| 3173465 | 2003.1.5.44 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MT-A70 | 0.53 | 47.0 | 3.29e-01 | 100.0% | 30.4% |
| 5052015 | 328.1.1.1 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba | 0.52 | 47.0 | 4.42e-01 | 100.0% | 82.9% |
| 3260145 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 42.0 | 3.76e-01 | 100.0% | 60.8% |
| 3613740 | 304.44.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 | 0.52 | 41.0 | 3.46e-01 | 87.1% | 56.2% |
| 3520807 | 5.1.4.139 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 | 0.52 | 44.0 | 2.78e-01 | 94.1% | 98.9% |
| 3583473 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.52 | 39.0 | 2.78e-01 | 84.7% | 40.0% |
| 3781531 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.51 | 39.0 | 3.86e-01 | 85.9% | 85.3% |
| 5027561 | 310.3.1.3 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PilN | 0.51 | 44.0 | 3.92e-01 | 96.5% | 70.4% |
| 4244642 | 6151.1.1.1 ↗ | alpha bundles › Helical bundle domain in S46 peptidase › Helical bundle domain in S46 peptidase › Helical bundle domain in S46 peptidase › Peptidase_S46 | 0.51 | 44.0 | 2.87e-01 | 97.6% | 43.0% |
| 3185077 | 331.3.1.46 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF7053 | 0.51 | 40.0 | 3.16e-01 | 87.1% | 83.8% |
| 3972956 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.50 | 43.0 | 3.71e-01 | 100.0% | 88.3% |
D2
high
residues 109-242
Domain cluster:
rep: NC_070967.1__YP_010671354.1__PQC17_gp205__00205__D25-115