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rifoxya1_full_scaffold_1_prodigal-single.1__X__X__00069

Bact-Vir

rifoxya1_full_scaffold_1_prodigal-single.1__X__X__00069

Identity

Kingdom:
phage

Quality

79.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-97
PDB
Domain cluster: representative
D2 medium residues 118-206
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1sqhA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 46.0 4.09e-01 91.0% 90.8%
2nn6C00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.55 47.0 3.46e-01 100.0% 82.2%
1ux5A03 1.20.58.2220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Formin, FH2 domain 0.53 42.0 3.10e-01 85.4% 72.4%
3tzgA00 2.40.160.150 Mainly Beta › Beta Barrel › Porin › 0.53 46.0 3.48e-01 100.0% 79.5%
4mtnA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.53 33.0 3.27e-01 100.0% 57.9%
5b4wA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 40.0 2.62e-01 88.8% 45.6%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4609836 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 42.0 4.34e-01 87.6% 81.2%
3918382 2004.1.1.433 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 0.55 46.0 2.83e-01 92.1% 71.6%
3921243 2004.1.1.433 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 0.54 43.0 2.64e-01 89.9% 75.4%
3520779 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 36.0 3.32e-01 95.5% 51.7%
3570691 220.1.1.208 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF28207 0.53 47.0 4.44e-01 100.0% 91.8%
4996624 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 45.0 3.11e-01 98.9% 27.4%
3612952 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 46.0 3.77e-01 100.0% 90.0%
3401140 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.51 43.0 2.84e-01 98.9% 20.9%
3604410 2004.1.1.293 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 0.51 44.0 3.58e-01 98.9% 53.9%
3509864 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.51 37.0 3.31e-01 94.4% 54.4%
3268906 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.51 33.0 3.39e-01 84.3% 67.4%
3567461 260.1.1.1 ↗ a+b duplicates or obligate multimers › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat › Plectin 0.51 42.0 2.98e-01 94.4% 40.0%
3871823 2004.1.1.433 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 0.50 43.0 2.75e-01 98.9% 18.8%
3777742 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.50 42.0 2.86e-01 98.9% 24.3%