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rifoxya1_full_scaffold_1_prodigal-single.1__X__X__00071
Bact-Virrifoxya1_full_scaffold_1_prodigal-single.1__X__X__00071
Identity
- Kingdom:
- phage
Quality
92.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-189
Domain cluster:
rep: HQ332141__AGN33808.1__HALG-00020__00020__D37-203
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01966.29 best | HD | 27.7 | 4.10e-06 | 68.5% | 78.5% |
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1xx7A00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.67 | 48.0 | 4.89e-01 | 88.2% | 75.0% |
| 4mcwA02 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.67 | 52.0 | 5.05e-01 | 91.0% | 74.1% |
| 4xxiA00 | 1.10.490.20 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins | 0.65 | 36.0 | 3.99e-01 | 78.7% | 65.3% |
| 2honB01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.65 | 59.0 | 5.10e-01 | 100.0% | 64.8% |
| 5xs2B02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.60 | 40.0 | 4.54e-01 | 94.9% | 90.9% |
| 6o0aA01 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.57 | 35.0 | 3.82e-01 | 79.2% | 72.5% |
| 3f0cA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 29.0 | 3.21e-01 | 91.0% | 63.2% |
| 1e9rA02 | 1.10.8.80 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Magnesium chelatase subunit I, C-Terminal domain | 0.53 | 34.0 | 4.03e-01 | 75.8% | 100.0% |
| 2mgyA01 | 1.20.1260.100 | Mainly Alpha › Up-down Bundle › Ferritin › TspO/MBR protein | 0.52 | 38.0 | 4.00e-01 | 75.3% | 91.9% |
| 1f8uA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 45.0 | 3.26e-01 | 94.9% | 80.0% |
| 3ay5A02 | 1.20.1410.10 | Mainly Alpha › Up-down Bundle › I/LWEQ domain › I/LWEQ domain | 0.51 | 37.0 | 3.88e-01 | 75.8% | 89.1% |
| 1tu9A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.51 | 31.0 | 3.48e-01 | 78.7% | 79.4% |
| 2okuA00 | 1.20.120.470 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Acyl-CoA dehydrogenase, C-terminal domain | 0.50 | 32.0 | 3.75e-01 | 88.8% | 91.8% |
| 2b2hA00 | 1.10.3430.10 | Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains | 0.50 | 46.0 | 3.56e-01 | 100.0% | 79.5% |
| 2hsbA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.50 | 30.0 | 3.50e-01 | 94.4% | 82.5% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4951316 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.80 | 71.0 | 6.84e-01 | 100.0% | 83.5% |
| 4551179 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.78 | 71.0 | 6.72e-01 | 100.0% | 81.4% |
| 4217922 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.78 | 71.0 | 6.68e-01 | 100.0% | 81.4% |
| 5039974 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.77 | 71.0 | 6.74e-01 | 100.0% | 83.9% |
| 4937468 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.76 | 58.0 | 5.46e-01 | 92.7% | 66.2% |
| 5052430 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.74 | 51.0 | 6.03e-01 | 82.0% | 99.2% |
| 5079110 | 131.1.1.10 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_3 | 0.65 | 49.0 | 4.84e-01 | 88.2% | 73.7% |
| 5047096 | 131.1.1.10 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_3 | 0.63 | 48.0 | 4.57e-01 | 87.1% | 68.3% |
| 3729975 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 28.0 | 4.03e-01 | 79.8% | 98.6% |
| 3606961 | 5067.1.1.0 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain | 0.55 | 39.0 | 4.21e-01 | 78.7% | 88.3% |
| 3973748 | 1075.5.1.12 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MurJ, Polysacc_synt_3 | 0.54 | 39.0 | 3.48e-01 | 74.2% | 82.4% |
| 3533264 | 109.3.1.460 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › PF28421 | 0.53 | 48.0 | 4.69e-01 | 97.2% | 94.7% |
| 3909519 | 601.1.2.122 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › PF28421 | 0.53 | 48.0 | 4.70e-01 | 97.2% | 94.7% |
| 4943152 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.53 | 28.0 | 3.43e-01 | 76.4% | 80.0% |
| 3586819 | 601.11.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain › Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain | 0.52 | 27.0 | 2.84e-01 | 74.7% | 48.2% |
| 4044665 | 131.2.1.4 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd,tRNA_NucTran2_2 | 0.52 | 44.0 | 3.93e-01 | 96.1% | 63.5% |
| 3278268 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.51 | 38.0 | 3.87e-01 | 77.0% | 84.6% |
| 4995712 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.51 | 26.0 | 3.36e-01 | 94.4% | 88.4% |
| 3956097 | 3281.1.1.1 ↗ | alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M | 0.51 | 45.0 | 3.11e-01 | 97.8% | 58.0% |
| 3604077 | 601.14.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin › Hemerythrin | 0.50 | 32.0 | 3.54e-01 | 98.3% | 78.6% |