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rifoxya1_full_scaffold_1_prodigal-single.1__X__X__00105

Bact-Vir

rifoxya1_full_scaffold_1_prodigal-single.1__X__X__00105

Identity

Kingdom:
phage

Quality

89.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-66
PDB
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.79 65.0 5.97e-01 87.7% 86.4%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.79 62.0 6.25e-01 84.6% 100.0%
4o5vA03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.76 59.0 5.56e-01 81.5% 98.7%
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.76 62.0 5.96e-01 87.7% 84.9%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 56.0 5.70e-01 78.5% 100.0%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 56.0 5.74e-01 80.0% 100.0%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 55.0 5.67e-01 80.0% 100.0%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.71 48.0 5.42e-01 70.8% 100.0%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 55.0 5.39e-01 89.2% 100.0%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.67 47.0 5.19e-01 73.8% 100.0%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.67 39.0 4.17e-01 83.1% 67.9%
3b79A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.66 56.0 4.60e-01 98.5% 91.2%
7razA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 47.0 4.30e-01 75.4% 68.2%
3m1uA01 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.65 55.0 4.12e-01 96.9% 71.3%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 50.0 5.00e-01 87.7% 100.0%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 49.0 4.74e-01 84.6% 94.7%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.63 50.0 4.00e-01 89.2% 43.1%
5yhhA00 2.40.33.20 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.62 47.0 3.32e-01 81.5% 76.4%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.61 46.0 4.09e-01 80.0% 75.6%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 42.0 4.32e-01 73.8% 100.0%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 46.0 3.74e-01 84.6% 87.4%
1h8uB00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.56 44.0 3.78e-01 90.8% 95.7%
1yzbA01 3.90.70.40 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.56 45.0 3.80e-01 95.4% 84.7%
1o67C00 2.40.33.20 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.56 46.0 3.26e-01 92.3% 85.7%
3bdwA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.56 46.0 3.90e-01 100.0% 89.4%
3rs1A00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.55 45.0 3.89e-01 100.0% 88.5%
3a35A01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.55 44.0 3.94e-01 87.7% 94.6%
3t7aA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.55 46.0 3.37e-01 100.0% 94.1%
2c6uA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.55 45.0 3.83e-01 100.0% 91.8%
3ff7C00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.54 43.0 3.81e-01 96.9% 93.8%
4g1vA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 44.0 3.70e-01 93.8% 96.6%
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.54 43.0 4.23e-01 89.2% 100.0%
3hupA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.53 43.0 3.73e-01 100.0% 88.4%
5e50A01 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.52 38.0 3.33e-01 78.5% 90.0%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.52 36.0 3.33e-01 73.8% 88.8%
1knmA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 35.0 2.92e-01 73.8% 69.8%
1kafA00 3.90.1150.20 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription regulator MotA, C-terminal domain 0.51 36.0 3.12e-01 76.9% 52.8%
4g6iB01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.51 40.0 3.73e-01 93.8% 98.9%
ECOD (81)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4972823 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.84 59.0 6.69e-01 73.8% 100.0%
5023740 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.84 59.0 6.70e-01 73.8% 100.0%
4946165 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.84 60.0 6.56e-01 75.4% 96.4%
4966534 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.82 58.0 6.58e-01 73.8% 100.0%
5056706 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.82 58.0 6.55e-01 73.8% 100.0%
5033075 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 59.0 6.39e-01 75.4% 94.5%
5040416 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 56.0 6.33e-01 72.3% 100.0%
4982334 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 60.0 6.46e-01 76.9% 98.2%
4952887 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 58.0 6.28e-01 75.4% 96.4%
4935681 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 58.0 6.27e-01 75.4% 96.4%
5058671 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 58.0 6.26e-01 75.4% 96.4%
4992872 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 58.0 6.26e-01 75.4% 100.0%
5017214 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 58.0 6.25e-01 75.4% 98.2%
142633 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.79 62.0 6.25e-01 84.6% 100.0%
4990212 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 58.0 6.25e-01 76.9% 100.0%
4947995 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 57.0 6.20e-01 76.9% 98.2%
3603357 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 58.0 6.33e-01 78.5% 100.0%
4524363 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.78 59.0 5.98e-01 81.5% 100.0%
5060760 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.77 57.0 5.71e-01 76.9% 93.8%
3306779 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.77 62.0 6.25e-01 84.6% 100.0%
4028885 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.77 62.0 6.21e-01 84.6% 100.0%
4284764 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.77 60.0 6.08e-01 83.1% 100.0%
5044373 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 57.0 5.89e-01 76.9% 96.7%
4158157 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.77 62.0 6.22e-01 84.6% 100.0%
5002449 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 57.0 6.22e-01 78.5% 94.5%
5050433 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 51.0 6.06e-01 70.8% 100.0%
3265170 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.77 62.0 6.21e-01 84.6% 100.0%
3948467 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.76 58.0 5.85e-01 80.0% 100.0%
4037383 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.76 61.0 6.10e-01 84.6% 100.0%
4077367 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.76 57.0 5.77e-01 80.0% 100.0%
5030430 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 55.0 5.58e-01 76.9% 90.8%
4292289 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.76 59.0 5.96e-01 83.1% 100.0%
4957409 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 55.0 6.17e-01 76.9% 100.0%
4038269 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.75 60.0 6.06e-01 84.6% 100.0%
4369736 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.75 50.0 5.92e-01 72.3% 100.0%
3950208 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.75 58.0 5.89e-01 83.1% 100.0%
4951199 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.75 57.0 5.47e-01 81.5% 100.0%
4146937 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.75 58.0 5.86e-01 83.1% 100.0%
4950396 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 56.0 6.06e-01 78.5% 94.5%
4213539 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.75 58.0 5.86e-01 83.1% 100.0%
3961546 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.74 56.0 5.62e-01 78.5% 93.8%
4419948 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.74 59.0 5.90e-01 84.6% 100.0%
4938404 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 56.0 6.02e-01 80.0% 94.5%
5025079 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 55.0 5.89e-01 78.5% 100.0%
4086925 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.73 60.0 6.09e-01 89.2% 100.0%
4952854 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.71 51.0 5.16e-01 75.4% 90.8%
3947085 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.71 53.0 5.17e-01 78.5% 87.1%
5019383 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.71 50.0 4.77e-01 73.8% 77.3%
4979962 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.71 49.0 4.96e-01 72.3% 78.5%
4084190 4.1.1.98 beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.70 54.0 5.68e-01 83.1% 96.6%
3839083 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.70 52.0 5.07e-01 78.5% 87.1%
4010317 4.1.1.395 beta barrels › SH3 › SH3 › SH3 › PF27398 0.70 59.0 5.94e-01 92.3% 100.0%
5036647 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.70 52.0 5.14e-01 80.0% 88.6%
4964421 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.70 50.0 5.08e-01 76.9% 90.8%
5054668 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 45.0 5.25e-01 73.8% 97.8%
4946993 4.1.1.479 beta barrels › SH3 › SH3 › SH3 › eIF-5a 0.69 57.0 5.57e-01 90.8% 100.0%
5075805 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 50.0 5.36e-01 78.5% 100.0%
4665407 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.68 50.0 5.58e-01 80.0% 100.0%
5028692 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.68 50.0 5.07e-01 78.5% 90.8%
3706087 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 50.0 5.18e-01 80.0% 96.7%
4182977 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.66 49.0 5.11e-01 80.0% 86.7%
3834747 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.66 49.0 4.83e-01 80.0% 87.1%
3643549 4.1.1.139 beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.66 52.0 4.89e-01 86.2% 86.3%
3234274 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 46.0 4.49e-01 75.4% 91.4%
4066146 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 51.0 4.31e-01 89.2% 78.1%
4049734 1.16.1.5 beta barrels › cradle loop barrel › Baseplate wedge protein gp6 domain I › Baseplate wedge protein gp6 domain I › Baseplate_J 0.61 45.0 4.30e-01 76.9% 69.3%
3973553 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 47.0 4.66e-01 83.1% 100.0%
3282992 391.1.2.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.59 40.0 3.41e-01 70.8% 56.5%
4038642 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.59 46.0 4.49e-01 83.1% 100.0%
1685099 1.1.7.51 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › NeqB_N 0.59 42.0 4.37e-01 80.0% 83.1%
3759214 10.32.1.1 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Laminin_B 0.59 49.0 3.68e-01 100.0% 56.8%
4001842 10.32.1.1 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Laminin_B 0.58 49.0 3.74e-01 100.0% 60.6%
3919300 206.1.3.42 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PPIP5K2_N 0.58 47.0 3.26e-01 96.9% 60.4%
4111597 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.57 43.0 4.34e-01 80.0% 100.0%
2077355 209.1.1.1 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.55 45.0 3.86e-01 100.0% 92.5%
3389401 209.1.1.1 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.54 44.0 3.28e-01 98.5% 55.5%
4174483 4004.1.1.3 beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD_kinase_C 0.53 38.0 3.02e-01 80.0% 64.2%
4080563 4004.1.1.3 beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD_kinase_C 0.53 41.0 3.16e-01 90.8% 67.4%
4945251 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 39.0 3.52e-01 86.2% 90.0%
4602848 1.1.7.5 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Lum_binding 0.52 42.0 3.88e-01 96.9% 94.4%
3972951 1.1.7.88 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.50 40.0 3.87e-01 90.8% 97.3%