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rifoxya1_full_scaffold_1_prodigal-single.1__X__X__00116

Bact-Vir

rifoxya1_full_scaffold_1_prodigal-single.1__X__X__00116

Identity

Kingdom:
phage

Quality

61.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 48-140
PDB
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 46.0 5.46e-01 74.2% 80.3%
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.81 47.0 5.67e-01 72.0% 85.7%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 47.0 5.76e-01 73.1% 91.5%
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.78 47.0 5.92e-01 73.1% 100.0%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.78 47.0 5.70e-01 76.3% 91.9%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 46.0 5.38e-01 75.3% 89.2%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.71 47.0 5.64e-01 75.3% 100.0%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 46.0 4.94e-01 73.1% 77.8%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 45.0 4.99e-01 72.0% 82.7%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 42.0 4.14e-01 73.1% 57.0%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 48.0 5.31e-01 74.2% 91.9%
1wgsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 48.0 4.19e-01 74.2% 53.4%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 47.0 5.14e-01 76.3% 94.4%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 47.0 5.22e-01 75.3% 92.1%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.65 45.0 3.82e-01 74.2% 43.7%
1vwxA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 42.0 4.56e-01 74.2% 77.5%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 44.0 4.91e-01 73.1% 89.0%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 42.0 3.85e-01 73.1% 52.1%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 43.0 5.07e-01 73.1% 100.0%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 42.0 4.53e-01 73.1% 79.5%
2jngA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 41.0 4.40e-01 75.3% 77.9%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 40.0 4.89e-01 71.0% 100.0%
4a4kA02 2.30.30.1160 Mainly Beta › Roll › SH3 type barrels. › 0.63 57.0 5.06e-01 98.9% 81.2%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 42.0 4.99e-01 72.0% 100.0%
1k1zA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 43.0 4.68e-01 71.0% 85.9%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 41.0 4.62e-01 72.0% 88.6%
2kgtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 42.0 4.67e-01 72.0% 88.9%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 40.0 4.24e-01 75.3% 74.7%
2vgeA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.61 41.0 3.15e-01 73.1% 31.4%
1v1cA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 43.0 4.93e-01 73.1% 100.0%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.61 45.0 4.14e-01 80.6% 66.9%
1awoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 37.0 4.47e-01 72.0% 100.0%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 40.0 4.67e-01 71.0% 97.0%
1i1jB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 45.0 4.32e-01 80.6% 80.8%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 40.0 4.37e-01 73.1% 90.7%
3hrsA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.56 40.0 4.34e-01 74.2% 90.8%
2dhjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 39.0 3.52e-01 74.2% 73.6%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 37.0 3.96e-01 73.1% 91.3%
4d47A00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 42.0 2.82e-01 90.3% 30.9%
6j5cA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.52 35.0 3.66e-01 76.3% 75.9%
2qf4A02 2.40.10.350 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 0.52 41.0 4.23e-01 90.3% 87.9%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.51 35.0 3.59e-01 72.0% 92.2%
ECOD (86)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4002985 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.85 52.0 6.49e-01 73.1% 96.7%
3344796 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.83 52.0 5.48e-01 74.2% 71.1%
3780847 4.1.1.187 beta barrels › SH3 › SH3 › SH3 › DIRP 0.81 49.0 4.12e-01 74.2% 38.0%
3450257 4.1.1.150 beta barrels › SH3 › SH3 › SH3 › DUF3123 0.80 55.0 5.50e-01 71.0% 70.5%
2126408 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.79 49.0 5.29e-01 75.3% 72.8%
3751502 4.1.1.365 beta barrels › SH3 › SH3 › SH3 › SH3_KIN17_C 0.79 46.0 5.32e-01 71.0% 78.6%
2527304 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.78 48.0 5.85e-01 73.1% 95.1%
3876680 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.78 51.0 4.97e-01 74.2% 62.0%
3703932 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 46.0 5.75e-01 73.1% 95.0%
3180573 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 57.0 5.73e-01 78.5% 82.1%
3482225 4.1.1.300 beta barrels › SH3 › SH3 › SH3 › KN17_SH3, SH3_KIN17_C 0.76 47.0 4.19e-01 74.2% 45.4%
3598283 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 48.0 4.23e-01 75.3% 46.9%
3843359 4.1.1.246 beta barrels › SH3 › SH3 › SH3 › Tudor_Coilin 0.74 55.0 5.76e-01 77.4% 85.9%
3188712 4.1.1.225 beta barrels › SH3 › SH3 › SH3 › DUF7025 0.72 51.0 5.02e-01 73.1% 78.0%
3274701 4.1.1.239 beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.72 45.0 5.62e-01 75.3% 100.0%
4091379 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 47.0 5.35e-01 74.2% 88.6%
3487837 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 51.0 3.88e-01 75.3% 34.5%
3328647 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.70 52.0 5.42e-01 100.0% 84.7%
158939 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 46.0 4.94e-01 73.1% 77.8%
3484007 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 46.0 5.28e-01 74.2% 90.0%
3591607 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.69 51.0 3.73e-01 77.4% 35.5%
3898952 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 46.0 5.08e-01 74.2% 84.0%
3397845 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 51.0 4.86e-01 76.3% 68.6%
3296833 4.1.1.300 beta barrels › SH3 › SH3 › SH3 › KN17_SH3, SH3_KIN17_C 0.69 51.0 4.41e-01 77.4% 82.6%
3549761 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 55.0 5.51e-01 84.9% 91.6%
3678872 4.1.1.239 beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.68 49.0 5.43e-01 74.2% 97.3%
3510786 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.68 42.0 4.86e-01 74.2% 89.2%
3492018 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 47.0 4.50e-01 74.2% 62.9%
3743730 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 41.0 4.54e-01 75.3% 76.0%
4022025 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.67 48.0 4.10e-01 75.3% 47.6%
3490689 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 43.0 4.96e-01 73.1% 87.1%
3576437 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 48.0 4.72e-01 74.2% 69.0%
647 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.67 48.0 4.19e-01 74.2% 53.4%
3431172 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.67 48.0 3.56e-01 76.3% 41.6%
3599257 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 45.0 5.36e-01 75.3% 100.0%
3819397 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.66 51.0 5.44e-01 100.0% 93.8%
3935507 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 48.0 4.68e-01 74.2% 73.0%
3789647 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 48.0 3.96e-01 75.3% 45.2%
3255741 219.1.1.51 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 0.66 45.0 3.60e-01 71.0% 37.2%
3675653 4.1.1.239 beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.65 47.0 5.26e-01 75.3% 93.3%
1793524 4.1.1.14 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.65 45.0 4.48e-01 73.1% 67.7%
3553413 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.65 49.0 5.15e-01 89.2% 85.9%
3625817 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.65 47.0 5.03e-01 98.9% 88.7%
3389432 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 43.0 4.75e-01 73.1% 84.0%
3879172 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 43.0 5.04e-01 72.0% 96.9%
3500684 4.1.1.71 beta barrels › SH3 › SH3 › SH3 › Gemin7 0.64 43.0 4.61e-01 75.3% 80.0%
3633294 219.1.1.93 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 0.64 54.0 4.70e-01 90.3% 63.8%
3227009 4.1.1.71 beta barrels › SH3 › SH3 › SH3 › Gemin7 0.64 40.0 4.44e-01 71.0% 78.7%
3723768 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 44.0 4.54e-01 76.3% 73.3%
147797 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.64 41.0 4.60e-01 71.0% 88.2%
4001172 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.64 42.0 4.74e-01 72.0% 88.6%
3879132 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 44.0 4.91e-01 74.2% 89.3%
3443078 4.1.1.330 beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.63 53.0 4.25e-01 89.2% 53.7%
3437797 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.63 45.0 3.30e-01 74.2% 34.4%
3173156 4.1.1.344 beta barrels › SH3 › SH3 › SH3 › PF31193 0.63 48.0 5.16e-01 86.0% 93.8%
25836 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.63 44.0 4.94e-01 76.3% 93.1%
4118011 4.1.1.248 beta barrels › SH3 › SH3 › SH3 › CABIT 0.63 46.0 4.77e-01 75.3% 90.6%
3599666 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.63 47.0 2.98e-01 78.5% 20.9%
3618259 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 44.0 4.29e-01 74.2% 67.6%
3788449 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 40.0 4.57e-01 74.2% 87.1%
4941652 4.23.1.2 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.62 46.0 4.25e-01 79.6% 68.0%
3714904 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.62 46.0 2.92e-01 78.5% 18.5%
4680114 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 41.0 4.54e-01 74.2% 84.0%
3740204 4.1.1.71 beta barrels › SH3 › SH3 › SH3 › Gemin7 0.61 41.0 4.33e-01 75.3% 76.5%
4087011 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 49.0 4.88e-01 86.0% 89.5%
3625263 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 51.0 5.02e-01 89.2% 98.0%
3226744 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 43.0 4.44e-01 74.2% 97.8%
3424637 4.1.1.313 beta barrels › SH3 › SH3 › SH3 › DUF7912 0.61 43.0 4.37e-01 75.3% 91.6%
4020558 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 39.0 4.47e-01 73.1% 93.8%
5036729 4.23.1.2 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.60 43.0 4.04e-01 77.4% 68.3%
4405469 4.1.1.248 beta barrels › SH3 › SH3 › SH3 › CABIT 0.60 43.0 4.30e-01 75.3% 78.9%
1436138 4.1.1.14 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.59 52.0 4.26e-01 93.5% 73.1%
4675879 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.59 43.0 3.10e-01 76.3% 30.6%
4215369 4.23.1.2 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.59 43.0 3.96e-01 78.5% 69.6%
3706000 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.59 41.0 4.50e-01 72.0% 94.7%
1548913 4.1.1.14 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.59 51.0 4.20e-01 93.5% 70.1%
3490032 1.1.7.45 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › eEFSec_4th 0.58 42.0 3.82e-01 76.3% 73.2%
5000523 4.23.1.2 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.57 43.0 4.04e-01 81.7% 70.0%
3434095 4.1.1.158 beta barrels › SH3 › SH3 › SH3 › DUF3444 0.57 48.0 4.57e-01 90.3% 90.9%
3225762 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.57 38.0 4.21e-01 73.1% 85.3%
3782999 219.1.1.115 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › AIM3_BBC1_C 0.57 41.0 3.56e-01 75.3% 54.5%
3511007 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.57 52.0 4.78e-01 100.0% 97.5%
3868602 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.55 43.0 4.22e-01 83.9% 89.0%
3920026 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.55 49.0 3.70e-01 95.7% 69.0%
3768116 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.53 41.0 3.17e-01 94.6% 36.3%
4941936 4.1.1.493 beta barrels › SH3 › SH3 › SH3 › PF29241 0.50 35.0 3.47e-01 71.0% 81.1%
D2 medium residues 141-196
PDB