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rifoxya1_full_scaffold_1_prodigal-single.1__X__X__00270
Bact-Virrifoxya1_full_scaffold_1_prodigal-single.1__X__X__00270
Identity
- Kingdom:
- phage
Quality
89.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-84
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2rdcA00 | 1.10.287.800 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 | 0.81 | 53.0 | 4.24e-01 | 70.4% | 36.1% |
| 2fb5A01 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.81 | 50.0 | 5.03e-01 | 94.4% | 62.5% |
| 7lv8A01 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.80 | 51.0 | 4.84e-01 | 80.3% | 56.0% |
| 2y39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.77 | 54.0 | 4.60e-01 | 91.5% | 46.4% |
| 1qsdA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.77 | 50.0 | 4.38e-01 | 76.1% | 46.1% |
| 1m5iA00 | 1.10.287.450 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.73 | 58.0 | 5.04e-01 | 100.0% | 57.1% |
| 2oceA01 | 1.10.10.650 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RuvA domain 2-like | 0.68 | 50.0 | 4.22e-01 | 77.5% | 63.7% |
| 2db7A01 | 6.10.250.980 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.68 | 45.0 | 5.12e-01 | 80.3% | 92.5% |
| 3mvpA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.67 | 49.0 | 3.83e-01 | 77.5% | 36.9% |
| 4aflA00 | 6.10.140.1740 | Special › Helix non-globular › Helix Hairpins › | 0.66 | 54.0 | 4.72e-01 | 88.7% | 60.8% |
| 4g6dB02 | 6.10.140.1800 | Special › Helix non-globular › Helix Hairpins › | 0.62 | 47.0 | 4.49e-01 | 81.7% | 74.1% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3376917 | 192.24.1.8 ↗ | alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain › CDK5RAP3 | 0.83 | 60.0 | 5.73e-01 | 88.7% | 66.3% |
| 3951780 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.77 | 62.0 | 3.72e-01 | 91.5% | 14.3% |
| 3989633 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.73 | 55.0 | 3.78e-01 | 85.9% | 23.7% |
| 3784055 | 192.24.1.0 ↗ | alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain | 0.73 | 62.0 | 4.93e-01 | 100.0% | 49.2% |
| 3883612 | 604.3.1.16 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › PF30007 | 0.71 | 57.0 | 4.20e-01 | 84.5% | 43.5% |
| 4633755 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.68 | 59.0 | 4.60e-01 | 100.0% | 80.5% |
| 3626981 | 604.3.1.16 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › PF30007 | 0.67 | 56.0 | 4.14e-01 | 88.7% | 40.6% |
| 3384197 | 101.1.17.40 ↗ | alpha arrays › HTH › HTH › FF domain › FF, FF_PRPF40A | 0.61 | 54.0 | 4.65e-01 | 98.6% | 97.3% |