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rifoxya1_full_scaffold_1_prodigal-single.1__X__X__00301
Bact-Virrifoxya1_full_scaffold_1_prodigal-single.1__X__X__00301
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-99
Domain cluster:
rep: ALT_07252016_14_scaffold_0_prodigal-single.1__X__X__00132__D29-77_93-127
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04717.19 best | Phage_base_V | 27.9 | 3.40e-06 | 98.9% | 93.3% |
D2
high
residues 110-206
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ld1A00 | 2.60.450.20 | Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › | 0.66 | 45.0 | 3.82e-01 | 99.0% | 42.7% |
| 4m0hA01 | 2.60.120.1440 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 49.0 | 4.30e-01 | 97.9% | 83.5% |
| 2jj6A00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 39.0 | 3.55e-01 | 92.8% | 56.0% |
| 4by2B00 | 2.60.450.20 | Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › | 0.53 | 47.0 | 4.04e-01 | 97.9% | 61.9% |
| 2durB01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 45.0 | 3.49e-01 | 100.0% | 96.5% |
| 2jozA01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 36.0 | 3.66e-01 | 83.5% | 74.0% |
| 2q74A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.50 | 41.0 | 3.78e-01 | 89.7% | 66.7% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3764875 | 77.3.1.1 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › Tcp10_C | 0.68 | 44.0 | 3.51e-01 | 93.8% | 33.2% |
| 441013 | 79.1.1.1 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Gp5_C | 0.62 | 46.0 | 3.50e-01 | 96.9% | 34.2% |
| 3711004 | 77.3.1.1 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › Tcp10_C | 0.58 | 45.0 | 4.14e-01 | 97.9% | 63.2% |
| 4968578 | 210.1.2.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain | 0.56 | 50.0 | 3.35e-01 | 99.0% | 37.9% |
| 3742387 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.53 | 46.0 | 3.11e-01 | 99.0% | 53.8% |
| 3521864 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.51 | 42.0 | 3.25e-01 | 91.8% | 54.5% |
| 3488356 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.50 | 37.0 | 2.81e-01 | 77.3% | 37.0% |