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rifoxya1_full_scaffold_1_prodigal-single.1__X__X__00304
Bact-Virrifoxya1_full_scaffold_1_prodigal-single.1__X__X__00304
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-169
Domain cluster:
rep: NC_041875.1__YP_009594310.1__FDG92_gp21__00021__D5-180
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01510.31 best | Amidase_2 | 27.7 | 4.10e-06 | 90.7% | 94.6% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6su5A01 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.84 | 69.0 | 6.91e-01 | 98.0% | 84.8% |
| 5xz3B00 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.83 | 73.0 | 7.01e-01 | 98.0% | 81.5% |
| 2rkqA00 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.83 | 72.0 | 6.86e-01 | 96.7% | 80.5% |
| 1ohtA00 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.82 | 72.0 | 6.82e-01 | 96.7% | 79.2% |
| 2eaxA00 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.82 | 71.0 | 6.90e-01 | 98.0% | 82.9% |
| 3rdrA00 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.80 | 66.0 | 6.62e-01 | 98.7% | 85.0% |
| 1yb0B00 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.80 | 68.0 | 6.67e-01 | 100.0% | 84.3% |
| 3ep1A00 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.77 | 68.0 | 6.59e-01 | 99.3% | 83.8% |
| 3ds8A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.54 | 41.0 | 3.51e-01 | 98.7% | 47.4% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2845647 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.89 | 73.0 | 7.29e-01 | 100.0% | 83.0% |
| 2774594 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.88 | 71.0 | 7.14e-01 | 99.3% | 82.9% |
| 3897241 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.83 | 73.0 | 7.18e-01 | 98.7% | 86.3% |
| 3767503 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.83 | 72.0 | 6.87e-01 | 98.0% | 79.2% |
| 4291672 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.82 | 72.0 | 6.94e-01 | 98.0% | 83.0% |
| 4088805 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.82 | 72.0 | 6.65e-01 | 98.7% | 74.6% |
| 3910569 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.82 | 72.0 | 6.70e-01 | 96.7% | 75.7% |
| 4429159 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.82 | 72.0 | 5.12e-01 | 96.7% | 34.8% |
| 3416111 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.81 | 71.0 | 6.81e-01 | 98.0% | 81.2% |
| 3401062 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.80 | 72.0 | 6.89e-01 | 98.7% | 82.9% |
| 1902111 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.79 | 67.0 | 6.48e-01 | 100.0% | 80.6% |
| 3967132 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.79 | 73.0 | 6.85e-01 | 97.4% | 82.8% |
| 3957313 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.79 | 75.0 | 6.65e-01 | 100.0% | 82.0% |
| 1900947 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.77 | 68.0 | 6.59e-01 | 99.3% | 83.8% |
| 4265814 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.76 | 70.0 | 6.78e-01 | 98.0% | 87.9% |
| 3953294 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.76 | 70.0 | 6.46e-01 | 100.0% | 78.9% |
| 3872829 | 7603.1.1.3 ↗ | a/b three-layered sandwiches › Immunomodulating metalloprotease IMPa N-terminal domain › Immunomodulating metalloprotease IMPa N-terminal domain › Immunomodulating metalloprotease IMPa N-terminal domain › PF27016 | 0.56 | 34.0 | 3.15e-01 | 88.7% | 43.4% |