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rifoxya1_full_scaffold_1_prodigal-single.1__X__X__00387
Bact-Virrifoxya1_full_scaffold_1_prodigal-single.1__X__X__00387
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-19_78-147
Domain cluster:
rep: MN047793.1__QDJ96454.1__Xoosp13_268__00268__D26-96
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08719.18 best | NADAR | 48.2 | 2.10e-12 | 75.3% | 42.9% |
D2
medium
residues 20-77
Domain cluster:
rep: PH2015_22_scaffold_1_prodigal-single.1__X__X__00105__D12-68
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08719.18 best | NADAR | 40.6 | 4.40e-10 | 100.0% | 35.6% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8bauA01 | 1.10.357.40 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › YbiA-like | 0.86 | 79.0 | 5.43e-01 | 100.0% | 35.9% |
| 2b3wA00 | 1.10.357.40 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › YbiA-like | 0.86 | 77.0 | 5.45e-01 | 100.0% | 35.1% |
| 1qr0A01 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.67 | 47.0 | 3.67e-01 | 74.1% | 88.0% |
| 4kjmA02 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.66 | 54.0 | 5.57e-01 | 89.7% | 96.4% |
| 1k32A03 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.58 | 44.0 | 4.19e-01 | 86.2% | 86.1% |
| 1zboA02 | 1.10.4060.10 | Mainly Alpha › Orthogonal Bundle › LON domain-like fold › BPP1347 like domain | 0.53 | 41.0 | 3.68e-01 | 86.2% | 97.6% |
| 1a3aC00 | 3.40.930.10 | Alpha Beta › 3-Layer(aba) Sandwich › Mannitol-specific EII; Chain A › Mannitol-specific EII; Chain A | 0.52 | 41.0 | 3.20e-01 | 94.8% | 93.2% |
| 4c98A02 | 3.30.70.1900 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 40.0 | 3.22e-01 | 94.8% | 83.2% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3281506 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.95 | 88.0 | 6.27e-01 | 100.0% | 38.0% |
| 3264987 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.92 | 86.0 | 6.20e-01 | 100.0% | 40.7% |
| 3279758 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.90 | 83.0 | 5.97e-01 | 100.0% | 41.6% |
| 3230388 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.90 | 82.0 | 5.54e-01 | 100.0% | 36.9% |
| 3972372 | 4308.1.1.0 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like | 0.89 | 82.0 | 5.61e-01 | 100.0% | 34.6% |
| 3789927 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.87 | 79.0 | 5.46e-01 | 100.0% | 39.4% |
| 7671 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.86 | 77.0 | 5.52e-01 | 100.0% | 36.9% |
| 3212620 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.84 | 77.0 | 5.22e-01 | 100.0% | 35.4% |
| 3185713 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.80 | 73.0 | 5.64e-01 | 100.0% | 50.0% |
| 3518372 | 4308.1.1.0 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like | 0.79 | 69.0 | 4.83e-01 | 100.0% | 38.9% |
| 3999783 | 4308.1.1.0 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like | 0.75 | 65.0 | 4.45e-01 | 100.0% | 32.9% |
| 3930688 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.75 | 65.0 | 4.53e-01 | 100.0% | 35.4% |
| 3616804 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.74 | 64.0 | 4.51e-01 | 100.0% | 36.3% |
| 3914549 | 110.1.1.0 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain | 0.71 | 53.0 | 4.23e-01 | 79.3% | 45.5% |
| 4458331 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.68 | 53.0 | 3.58e-01 | 87.9% | 79.1% |
| 4886283 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.68 | 53.0 | 3.58e-01 | 87.9% | 80.0% |
| 4183142 | 11.1.1.154 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GlgE_dom_N_S | 0.68 | 48.0 | 3.37e-01 | 75.9% | 31.8% |
| 3892614 | 376.1.1.100 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PF26148 | 0.52 | 35.0 | 3.12e-01 | 70.7% | 61.1% |
| 4410482 | 2003.1.5.8 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Ubie_methyltran | 0.50 | 31.0 | 2.15e-01 | 75.9% | 15.7% |