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rifoxyb1_full_scaffold_4_prodigal-single.1__X__X__00009
Bact-Virrifoxyb1_full_scaffold_4_prodigal-single.1__X__X__00009
Identity
- Kingdom:
- phage
Quality
83.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 4-64
Domain cluster:
rep: NC_023712.1__YP_009014466.1__CL96_gp103__00103__D8-56
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4bv4R00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.66 | 45.0 | 2.69e-01 | 70.5% | 19.8% |
| 5xbfA03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.65 | 45.0 | 3.99e-01 | 72.1% | 70.5% |
| 2ffgA00 | 3.30.720.20 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 | 0.63 | 43.0 | 3.97e-01 | 72.1% | 61.3% |
| 1omoA01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.61 | 46.0 | 3.54e-01 | 83.6% | 45.0% |
| 5jk0B01 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.59 | 43.0 | 3.12e-01 | 96.7% | 27.2% |
| 3b77A01 | 2.30.29.50 | Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain | 0.59 | 40.0 | 3.47e-01 | 72.1% | 63.0% |
| 2hc5A01 | 3.30.160.170 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like | 0.59 | 49.0 | 4.25e-01 | 96.7% | 59.2% |
| 6qp9B01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 47.0 | 2.86e-01 | 95.1% | 44.3% |
| 1iwlA00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.57 | 49.0 | 3.62e-01 | 100.0% | 54.2% |
| 1ti2A01 | 2.20.25.340 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.57 | 34.0 | 3.37e-01 | 73.8% | 51.5% |
| 7byjA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.57 | 39.0 | 3.48e-01 | 73.8% | 72.6% |
| 3cm1A00 | 2.30.31.20 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB | 0.57 | 47.0 | 3.78e-01 | 100.0% | 44.1% |
| 7obmA01 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.55 | 43.0 | 2.90e-01 | 96.7% | 51.1% |
| 5h1kB02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 42.0 | 2.78e-01 | 91.8% | 50.5% |
| 6obtA00 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.54 | 38.0 | 2.59e-01 | 78.7% | 75.0% |
| 2prxA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.54 | 40.0 | 3.34e-01 | 82.0% | 100.0% |
| 4xpkA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 37.0 | 2.93e-01 | 72.1% | 100.0% |
| 3fehA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 46.0 | 3.72e-01 | 100.0% | 49.2% |
| 3nvqA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 45.0 | 2.74e-01 | 98.4% | 30.6% |
| 1shyB01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 42.0 | 2.66e-01 | 100.0% | 32.4% |
| 6scxC01 | 3.90.79.20 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › | 0.52 | 39.0 | 2.82e-01 | 78.7% | 64.0% |
| 1p9rA01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.52 | 42.0 | 3.57e-01 | 95.1% | 53.2% |
| 7t8tA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 43.0 | 3.49e-01 | 100.0% | 57.3% |
| 4eqaC00 | 2.40.128.650 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 41.0 | 3.30e-01 | 100.0% | 82.7% |
| 2klaA00 | 3.30.420.130 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Dinitrogenase iron-molybdenum cofactor biosynthesis domain | 0.50 | 41.0 | 3.44e-01 | 90.2% | 67.9% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3228340 | 4075.1.1.2 ↗ | a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 | 0.68 | 49.0 | 4.15e-01 | 77.0% | 86.0% |
| 3942738 | 295.1.1.29 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › YjeJ | 0.66 | 57.0 | 4.13e-01 | 93.4% | 80.6% |
| 4941649 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.65 | 45.0 | 3.87e-01 | 72.1% | 66.3% |
| 3925891 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.65 | 45.0 | 3.93e-01 | 72.1% | 71.1% |
| 3576335 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.63 | 54.0 | 3.42e-01 | 98.4% | 38.8% |
| 3643001 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.63 | 42.0 | 3.38e-01 | 70.5% | 70.8% |
| 3743579 | 5.1.4.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH | 0.61 | 50.0 | 3.20e-01 | 91.8% | 43.0% |
| 3437522 | 1.1.1.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Pol_BBD | 0.61 | 41.0 | 3.27e-01 | 70.5% | 34.4% |
| 4963350 | 220.1.1.323 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7115 | 0.61 | 44.0 | 3.79e-01 | 100.0% | 48.0% |
| 3499683 | 5.1.5.54 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_NOL10_N | 0.60 | 48.0 | 3.02e-01 | 90.2% | 31.9% |
| 4451022 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.60 | 41.0 | 3.36e-01 | 72.1% | 55.0% |
| 4928574 | 241.11.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like | 0.60 | 42.0 | 3.76e-01 | 73.8% | 73.9% |
| 3269700 | 5.1.4.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH | 0.60 | 50.0 | 3.27e-01 | 95.1% | 48.5% |
| 5060431 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.59 | 47.0 | 2.98e-01 | 93.4% | 63.9% |
| 3744425 | 5.1.4.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH | 0.58 | 47.0 | 2.98e-01 | 98.4% | 59.5% |
| 5071984 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.58 | 39.0 | 3.00e-01 | 70.5% | 38.6% |
| 4025089 | 5.1.4.62 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN | 0.58 | 46.0 | 2.98e-01 | 95.1% | 59.7% |
| 4631877 | 5.1.4.219 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DPPIV_N | 0.57 | 47.0 | 2.80e-01 | 95.1% | 49.2% |
| 3758651 | 633.23.1.34 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › CD20 | 0.57 | 42.0 | 2.96e-01 | 77.0% | 25.8% |
| 3269529 | 5.1.4.605 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PH | 0.56 | 44.0 | 2.73e-01 | 100.0% | 13.8% |
| 3581093 | 4292.2.1.0 ↗ | a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain | 0.56 | 49.0 | 4.50e-01 | 100.0% | 87.5% |
| 3251123 | 319.1.1.3 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS | 0.56 | 42.0 | 3.49e-01 | 78.7% | 93.0% |
| 2800366 | 5.1.4.14 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N | 0.56 | 48.0 | 3.04e-01 | 100.0% | 35.2% |
| 3174821 | 5.1.4.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH | 0.56 | 48.0 | 3.08e-01 | 100.0% | 40.3% |
| 3891698 | 5.1.4.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH | 0.55 | 45.0 | 2.97e-01 | 95.1% | 52.8% |
| 3500968 | 5.1.4.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH | 0.55 | 43.0 | 2.74e-01 | 91.8% | 54.8% |
| 3174934 | 5.1.4.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH | 0.54 | 45.0 | 2.91e-01 | 95.1% | 41.3% |
| 4028760 | 319.1.1.3 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS | 0.54 | 41.0 | 3.26e-01 | 78.7% | 84.3% |
| 3591998 | 220.1.1.11 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru | 0.54 | 48.0 | 3.96e-01 | 100.0% | 59.1% |
| 3365771 | 2008.6.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central | 0.54 | 38.0 | 2.64e-01 | 77.0% | 63.3% |
| 3561513 | 5.1.4.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH | 0.54 | 43.0 | 2.73e-01 | 95.1% | 50.8% |
| 4027467 | 306.3.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like | 0.53 | 36.0 | 3.10e-01 | 70.5% | 68.6% |
| 3519594 | 223.2.1.19 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 | 0.53 | 41.0 | 3.28e-01 | 95.1% | 91.6% |
| 1414015 | 5.1.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › Hemopexin | 0.53 | 42.0 | 2.96e-01 | 90.2% | 42.2% |
| 3238618 | 5.1.4.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH | 0.53 | 44.0 | 2.77e-01 | 96.7% | 31.0% |
| 3931300 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.52 | 46.0 | 4.04e-01 | 98.4% | 93.3% |
| 4951829 | 3012.1.1.1 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Trehalose_PPase | 0.52 | 35.0 | 3.29e-01 | 98.4% | 56.0% |
| 4680096 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.52 | 35.0 | 3.29e-01 | 72.1% | 66.3% |
| 3387142 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 44.0 | 3.13e-01 | 98.4% | 47.9% |
| 5007420 | 2484.1.1.333 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1464 | 0.51 | 41.0 | 3.11e-01 | 93.4% | 60.0% |
| 5054848 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.51 | 42.0 | 3.70e-01 | 100.0% | 94.0% |
| 3915679 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.51 | 43.0 | 3.35e-01 | 96.7% | 69.3% |