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rifoxyb1_full_scaffold_4_prodigal-single.1__X__X__00014
Bact-Virrifoxyb1_full_scaffold_4_prodigal-single.1__X__X__00014
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-77
Domain cluster:
rep: IMGVR_UViG_3300028840_006907-3300028840-Ga0309773_1000015249__D4-79
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pd0A01 | 3.30.2310.50 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › Protein of unknown function (DUF3228), domain 1 | 0.64 | 54.0 | 4.68e-01 | 97.3% | 88.3% |
| 4uoiC00 | 3.30.160.890 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Hepatitis C virus envelope glycoprotein E1, chain C | 0.61 | 38.0 | 4.30e-01 | 84.0% | 90.2% |
| 2it9A00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.60 | 48.0 | 4.22e-01 | 92.0% | 95.0% |
| 4hntA04 | 3.10.600.10 | Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain | 0.57 | 43.0 | 3.90e-01 | 81.3% | 98.0% |
| 1jcfA03 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.56 | 48.0 | 4.84e-01 | 98.7% | 96.1% |
| 2eqsA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 40.0 | 3.79e-01 | 76.0% | 80.9% |
| 3p0lD00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 49.0 | 3.67e-01 | 98.7% | 57.8% |
| 1cbiA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.55 | 46.0 | 3.89e-01 | 97.3% | 83.8% |
| 3tw6D02 | 3.10.600.10 | Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain | 0.54 | 42.0 | 4.19e-01 | 84.0% | 100.0% |
| 4up7A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 40.0 | 3.25e-01 | 82.7% | 59.9% |
| 7lt2A01 | 3.30.460.90 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.53 | 38.0 | 2.74e-01 | 78.7% | 74.3% |
| 6c1zA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 43.0 | 3.71e-01 | 98.7% | 81.9% |
| 7yh1A01 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.52 | 43.0 | 3.92e-01 | 100.0% | 93.9% |
| 4exrA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 36.0 | 3.74e-01 | 98.7% | 78.9% |
| 5zg8A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 39.0 | 3.54e-01 | 81.3% | 80.4% |
| 3doaA01 | 2.30.310.10 | Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain | 0.51 | 38.0 | 3.10e-01 | 100.0% | 39.9% |
| 1zs7A01 | 3.10.450.120 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 | 0.51 | 37.0 | 3.32e-01 | 77.3% | 68.3% |
| 7nn3B01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.50 | 41.0 | 2.76e-01 | 93.3% | 88.7% |
| 6l4qB01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 39.0 | 3.30e-01 | 86.7% | 67.4% |
| 1olzA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.50 | 42.0 | 2.62e-01 | 96.0% | 91.6% |
| 1l0wA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 38.0 | 3.42e-01 | 82.7% | 77.4% |
| 1vr8A00 | 3.40.1000.20 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like | 0.50 | 41.0 | 3.57e-01 | 100.0% | 82.2% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4959385 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.70 | 58.0 | 5.81e-01 | 97.3% | 90.7% |
| 3944566 | 809.1.1.10 ↗ | a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › EndoU_bacteria | 0.67 | 50.0 | 5.37e-01 | 84.0% | 100.0% |
| 3684918 | 6043.1.1.0 ↗ | a+b two layers › yfeY-like › yfeY-like › yfeY-like | 0.65 | 47.0 | 4.96e-01 | 76.0% | 100.0% |
| 3639553 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.61 | 46.0 | 3.42e-01 | 84.0% | 62.3% |
| 4463632 | 4312.1.1.3 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin | 0.59 | 49.0 | 4.70e-01 | 97.3% | 90.0% |
| 3736764 | 3711.1.1.0 ↗ | alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein | 0.56 | 43.0 | 3.28e-01 | 82.7% | 59.4% |
| 5024985 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.56 | 38.0 | 3.91e-01 | 77.3% | 74.3% |
| 5054047 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.56 | 37.0 | 3.71e-01 | 72.0% | 66.7% |
| 4024746 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.56 | 50.0 | 3.52e-01 | 98.7% | 51.7% |
| 4032095 | 6043.1.1.6 ↗ | a+b two layers › yfeY-like › yfeY-like › yfeY-like › PF28288 | 0.56 | 42.0 | 4.30e-01 | 90.7% | 82.7% |
| 5004521 | 4317.1.1.0 ↗ | a+b duplicates or obligate multimers › YdfO-like › YdfO-like › YdfO-like | 0.55 | 26.0 | 2.94e-01 | 96.0% | 56.7% |
| 4561170 | 5.1.5.4 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N | 0.54 | 46.0 | 2.85e-01 | 94.7% | 97.1% |
| 3932713 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.54 | 40.0 | 2.61e-01 | 80.0% | 97.1% |
| 4960423 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 43.0 | 2.77e-01 | 86.7% | 81.8% |
| 3709800 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.53 | 39.0 | 3.64e-01 | 97.3% | 62.1% |
| 4937958 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.53 | 36.0 | 2.40e-01 | 70.7% | 26.2% |
| 3284940 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.53 | 41.0 | 2.39e-01 | 84.0% | 46.4% |
| 3595236 | 7563.1.1.0 ↗ | a/b three-layered sandwiches › MCP/YpsA-related › MCP/YpsA-related › MCP/YpsA-related | 0.53 | 38.0 | 2.64e-01 | 78.7% | 77.2% |
| 4943214 | 896.1.1.0 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related | 0.51 | 34.0 | 3.51e-01 | 85.3% | 74.3% |
| 4972768 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.50 | 44.0 | 2.92e-01 | 96.0% | 29.1% |
| 4033432 | 243.3.1.3 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY | 0.50 | 36.0 | 3.84e-01 | 98.7% | 95.0% |
| 2998372 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.50 | 29.0 | 3.32e-01 | 77.3% | 79.2% |