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rifoxyb1_full_scaffold_4_prodigal-single.1__X__X__00021
Bact-Virrifoxyb1_full_scaffold_4_prodigal-single.1__X__X__00021
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 11-128_179-256
Domain cluster:
rep: rifcsphigho2_12_scaffold_16_prodigal-single.1__X__X__00347__D11-156
D2
medium
residues 257-321
Domain cluster:
rep: MW584211.1__QSM05137.1__PROPHIGD102-1_38__00038__D323-387
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20530.4 best | DUF6745 | 30.2 | 3.80e-07 | 95.4% | 26.2% |
D3
medium
residues 322-427
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1lwjA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.58 | 28.0 | 3.71e-01 | 73.6% | 92.0% |
| 3tdgA01 | 3.10.450.520 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 35.0 | 4.34e-01 | 95.3% | 98.5% |
| 2xe4A02 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.57 | 47.0 | 3.26e-01 | 88.7% | 41.8% |
| 4aghA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.55 | 37.0 | 4.15e-01 | 88.7% | 90.0% |
| 2xzhA00 | 2.130.10.110 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain | 0.55 | 46.0 | 3.19e-01 | 91.5% | 59.2% |
| 6vp6A03 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 43.0 | 3.04e-01 | 86.8% | 46.3% |
| 1w0pA02 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.52 | 43.0 | 2.96e-01 | 90.6% | 50.1% |
| 7b9cA02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 40.0 | 2.84e-01 | 87.7% | 69.1% |
| 7oufB01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.51 | 37.0 | 3.32e-01 | 82.1% | 54.4% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3715886 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.62 | 53.0 | 3.61e-01 | 92.5% | 43.5% |
| 4024970 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.61 | 51.0 | 3.40e-01 | 91.5% | 43.3% |
| 3709162 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.58 | 49.0 | 3.49e-01 | 92.5% | 44.2% |
| 4324380 | 5.1.5.213 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PF29037 | 0.58 | 40.0 | 2.71e-01 | 70.8% | 37.3% |
| 3574360 | 5.1.3.25 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Mcl1_mid | 0.58 | 48.0 | 3.51e-01 | 91.5% | 53.4% |
| 3309019 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.58 | 44.0 | 3.21e-01 | 83.0% | 72.8% |
| 5045363 | 5.1.4.14 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N | 0.57 | 47.0 | 3.32e-01 | 90.6% | 44.6% |
| 3601202 | 5.1.4.220 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR35_2nd | 0.55 | 46.0 | 3.30e-01 | 91.5% | 53.8% |
| 4019954 | 5.1.4.169 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd | 0.54 | 44.0 | 3.08e-01 | 88.7% | 48.2% |
| 3361969 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.54 | 46.0 | 3.32e-01 | 94.3% | 52.3% |
| 3174935 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 46.0 | 3.16e-01 | 95.3% | 45.9% |
| 3263735 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 45.0 | 3.15e-01 | 92.5% | 60.6% |
| 3444588 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.53 | 42.0 | 2.98e-01 | 87.7% | 59.7% |
| 3580035 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 44.0 | 3.12e-01 | 92.5% | 60.9% |
| 3691934 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 43.0 | 2.83e-01 | 92.5% | 38.8% |
| 3441510 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.51 | 43.0 | 3.33e-01 | 96.2% | 74.1% |
| 151649 | 5.1.4.11 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Clathrin_propel | 0.51 | 44.0 | 3.09e-01 | 93.4% | 52.4% |
| 5007357 | 3435.1.1.10 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › PF27341 | 0.51 | 40.0 | 3.11e-01 | 84.0% | 82.2% |