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rifoxyb1_full_scaffold_4_prodigal-single.1__X__X__00054
Bact-Virrifoxyb1_full_scaffold_4_prodigal-single.1__X__X__00054
Identity
- Kingdom:
- phage
Quality
82.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-80
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hujA00 | 1.20.120.440 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like | 0.75 | 51.0 | 4.18e-01 | 83.8% | 41.6% |
| 1mijA00 | 1.10.10.500 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeo-prospero domain | 0.72 | 41.0 | 3.32e-01 | 85.1% | 30.2% |
| 3gwnA00 | 1.20.120.310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain | 0.61 | 54.0 | 4.72e-01 | 100.0% | 91.2% |
| 2l6jA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.60 | 38.0 | 3.30e-01 | 93.2% | 41.4% |
| 3vw4A01 | 1.10.340.50 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › | 0.59 | 45.0 | 4.22e-01 | 100.0% | 67.4% |
| 8b6jF01 | 1.10.287.20 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain | 0.58 | 37.0 | 3.85e-01 | 85.1% | 70.1% |
| 3r0qA02 | 2.70.160.11 | Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 | 0.58 | 47.0 | 3.45e-01 | 90.5% | 70.2% |
| 1tt5B02 | 1.10.10.520 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ubiquitin activating enzymes (Uba3). Chain: B, domain 2 | 0.55 | 43.0 | 4.28e-01 | 100.0% | 81.8% |
| 3oxfA05 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.51 | 37.0 | 3.78e-01 | 98.6% | 78.7% |
| 1c8iA01 | 1.10.520.10 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › | 0.51 | 45.0 | 3.37e-01 | 100.0% | 73.1% |
| 3crvA02 | 1.10.275.30 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › | 0.51 | 42.0 | 3.65e-01 | 87.8% | 69.4% |
| 1vw4801 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.51 | 38.0 | 3.85e-01 | 100.0% | 82.2% |
| 2w02B01 | 1.10.150.640 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle | 0.50 | 38.0 | 3.83e-01 | 83.8% | 95.9% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5032424 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.64 | 57.0 | 4.16e-01 | 100.0% | 43.1% |
| 3193871 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 50.0 | 3.23e-01 | 100.0% | 18.9% |
| 3741751 | 109.4.1.602 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Dor1 | 0.57 | 52.0 | 3.61e-01 | 100.0% | 33.9% |
| 4625372 | 6171.1.1.0 ↗ | alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases | 0.56 | 44.0 | 4.19e-01 | 89.2% | 71.9% |
| 4999825 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.54 | 42.0 | 3.83e-01 | 89.2% | 62.0% |
| 3606464 | 5069.1.1.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes | 0.54 | 48.0 | 3.23e-01 | 100.0% | 68.3% |
| 3598230 | 574.1.1.0 ↗ | alpha bundles › Surp module (SWAP domain) › Surp module (SWAP domain) › Surp module (SWAP domain) | 0.54 | 37.0 | 4.09e-01 | 100.0% | 90.0% |
| 3588902 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.51 | 44.0 | 3.66e-01 | 100.0% | 83.6% |
| 3536798 | 633.24.1.4 ↗ | alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › RIN1 | 0.50 | 43.0 | 3.97e-01 | 98.6% | 83.0% |