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rifoxyb1_full_scaffold_4_prodigal-single.1__X__X__00070

Bact-Vir

rifoxyb1_full_scaffold_4_prodigal-single.1__X__X__00070

Identity

Kingdom:
phage

Quality

70.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-62
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6bogA02 2.30.30.930 Mainly Beta › Roll › SH3 type barrels. › 0.72 51.0 5.11e-01 80.0% 75.0%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 51.0 5.42e-01 80.0% 98.0%
4epcA02 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.67 54.0 5.15e-01 90.0% 98.6%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 51.0 4.82e-01 85.0% 70.8%
3al9A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.65 54.0 3.21e-01 95.0% 35.7%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 48.0 4.71e-01 85.0% 75.4%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 50.0 4.76e-01 86.7% 73.2%
1f89A00 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.63 45.0 2.98e-01 76.7% 36.2%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 49.0 4.64e-01 88.3% 76.3%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 44.0 4.54e-01 78.3% 80.4%
2bujB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 45.0 3.98e-01 80.0% 85.1%
3pieC09 2.30.30.750 Mainly Beta › Roll › SH3 type barrels. › 0.62 52.0 4.46e-01 95.0% 88.9%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 48.0 4.18e-01 88.3% 55.0%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 47.0 4.69e-01 86.7% 83.9%
4dapA01 2.40.50.580 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 41.0 3.79e-01 78.3% 53.8%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 46.0 3.57e-01 100.0% 38.2%
4yy8A02 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.60 49.0 3.18e-01 93.3% 92.3%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.60 49.0 3.71e-01 100.0% 88.1%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.59 47.0 3.70e-01 96.7% 41.7%
1yuaA02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.59 40.0 4.07e-01 78.3% 74.1%
2re3A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.58 45.0 4.39e-01 88.3% 77.1%
3ab1A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 44.0 3.58e-01 86.7% 94.4%
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 44.0 4.40e-01 96.7% 85.7%
3aa0B01 1.20.58.570 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › F-actin capping protein, alpha/beta subunit, N-terminal domain 0.57 40.0 3.60e-01 83.3% 52.3%
1ddvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 43.0 3.74e-01 88.3% 57.7%
5ygqA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 44.0 3.60e-01 90.0% 95.9%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 42.0 4.10e-01 95.0% 74.6%
2rm4A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 46.0 4.53e-01 98.3% 98.5%
2wozA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.56 46.0 2.99e-01 96.7% 80.8%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 43.0 4.35e-01 96.7% 91.9%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 48.0 4.47e-01 100.0% 81.3%
3os7A00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 42.0 2.70e-01 88.3% 43.9%
6cz7A01 2.20.25.90 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains 0.54 41.0 4.11e-01 86.7% 87.1%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.54 42.0 4.18e-01 93.3% 84.8%
4fk1A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 38.0 3.24e-01 80.0% 98.2%
6lf2B01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 38.0 3.14e-01 80.0% 62.9%
4ebrA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.52 42.0 3.24e-01 95.0% 73.9%
4gp3A03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 38.0 3.15e-01 85.0% 69.7%
4iq0C02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.50 37.0 2.79e-01 85.0% 75.7%
2qzbA00 2.60.460.10 Mainly Beta › Sandwich › protein yfey like fold › protein yfey like domain 0.50 34.0 2.67e-01 78.3% 29.0%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4168653 4.1.1.111 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_RapA 0.76 53.0 5.64e-01 80.0% 88.0%
4284709 4.1.1.111 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_RapA 0.72 51.0 5.34e-01 80.0% 81.8%
3174977 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.70 52.0 4.55e-01 86.7% 51.6%
5004050 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 53.0 5.09e-01 88.3% 70.0%
4974669 4.1.1.458 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2098 0.70 47.0 4.15e-01 80.0% 46.7%
4481026 4.1.1.407 ↗ beta barrels › SH3 › SH3 › SH3 › PF29661 0.70 54.0 5.42e-01 90.0% 85.0%
3510786 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.68 50.0 4.92e-01 80.0% 75.4%
3918299 4.1.1.376 ↗ beta barrels › SH3 › SH3 › SH3 › Chromo_MORC2_6th 0.68 53.0 5.08e-01 86.7% 82.9%
3704395 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 53.0 5.25e-01 86.7% 89.1%
3622139 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.68 48.0 4.32e-01 80.0% 52.2%
3713334 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.67 53.0 5.34e-01 86.7% 95.0%
4938828 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 52.0 5.26e-01 88.3% 85.0%
3596095 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.66 51.0 3.17e-01 85.0% 24.5%
4605602 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 51.0 5.02e-01 85.0% 78.5%
4938919 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 51.0 5.02e-01 85.0% 80.0%
4937389 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.66 52.0 4.34e-01 88.3% 50.0%
3701943 206.1.1.78 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kinase-like 0.66 50.0 3.11e-01 85.0% 23.2%
4565837 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.66 52.0 4.51e-01 88.3% 58.9%
1567496 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.65 51.0 5.24e-01 86.7% 93.0%
3177693 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.65 49.0 3.04e-01 83.3% 14.7%
3586469 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.65 50.0 4.52e-01 85.0% 64.7%
5037939 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.65 48.0 3.63e-01 81.7% 32.3%
3553166 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.65 51.0 4.11e-01 88.3% 75.2%
3630782 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.65 50.0 3.80e-01 85.0% 44.1%
3972820 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 50.0 4.60e-01 85.0% 92.5%
3867207 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.65 51.0 4.44e-01 88.3% 67.4%
3698762 4.1.1.6 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C 0.65 51.0 4.26e-01 86.7% 50.5%
3500542 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.64 50.0 4.43e-01 86.7% 57.8%
4271974 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.64 50.0 4.97e-01 86.7% 81.2%
3858796 5.1.3.147 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Beta-prop_ATRN-LZTR1 0.63 49.0 3.07e-01 86.7% 64.8%
3859055 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.62 50.0 3.20e-01 90.0% 38.9%
3881119 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 46.0 4.24e-01 95.0% 61.3%
4026958 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 48.0 4.99e-01 88.3% 96.4%
3900348 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.62 52.0 3.34e-01 95.0% 97.5%
5066224 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.61 50.0 4.47e-01 93.3% 63.3%
3591224 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 45.0 4.77e-01 85.0% 96.0%
4124092 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 48.0 4.62e-01 88.3% 80.0%
4390515 71.1.1.3 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.61 51.0 3.85e-01 98.3% 95.6%
3741277 206.1.1.70 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.61 46.0 2.91e-01 85.0% 24.6%
3586559 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 50.0 4.49e-01 93.3% 88.2%
3538024 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.60 47.0 3.04e-01 90.0% 37.8%
3935469 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.60 46.0 4.48e-01 86.7% 80.0%
3947700 4.8.1.25 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DSRB 0.60 48.0 4.81e-01 91.7% 95.2%
4957888 4.1.1.458 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2098 0.60 48.0 4.85e-01 90.0% 93.3%
3597513 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 42.0 4.35e-01 85.0% 85.5%
3622425 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.59 46.0 3.79e-01 90.0% 47.5%
3535278 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 42.0 4.26e-01 93.3% 81.7%
3492016 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.58 44.0 3.99e-01 93.3% 57.8%
3525879 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.58 49.0 3.16e-01 98.3% 78.7%
3752137 5.1.3.135 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_KLHDC2_KLHL20_DRC7, Beta-prop_ATRN-LZTR1 0.58 49.0 3.15e-01 98.3% 76.2%
1563361 2003.1.3.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_2 0.58 44.0 2.91e-01 88.3% 69.0%
3279470 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.58 43.0 3.92e-01 86.7% 62.2%
3665917 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.57 47.0 3.13e-01 95.0% 94.2%
3725139 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 46.0 4.39e-01 95.0% 80.0%
4027502 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 46.0 4.54e-01 95.0% 93.8%
3690549 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 47.0 4.58e-01 98.3% 95.7%
184917 4.1.1.81 ↗ beta barrels › SH3 › SH3 › SH3 › LSM14 0.56 46.0 4.04e-01 98.3% 65.3%
4555637 2008.1.1.4 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.55 43.0 3.12e-01 86.7% 37.8%
3473732 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 47.0 4.62e-01 100.0% 96.9%
4098926 244.1.1.3 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › GIDA 0.55 39.0 2.37e-01 76.7% 70.0%
3433895 375.1.1.191 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_GRF 0.55 36.0 3.49e-01 70.0% 58.6%
3794347 4096.1.1.1 ↗ a+b two layers › NAP-like › NAP-like › NAP-like › NAP 0.55 44.0 3.25e-01 96.7% 95.9%
3172870 4.1.1.67 ↗ beta barrels › SH3 › SH3 › SH3 › FDF 0.54 46.0 4.04e-01 100.0% 67.4%
3783301 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 46.0 3.93e-01 100.0% 63.8%
3181531 2002.1.1.83 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_1 0.54 44.0 2.65e-01 96.7% 87.0%
2167708 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 44.0 4.39e-01 98.3% 93.8%
4973749 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 41.0 3.97e-01 90.0% 75.7%
4139173 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.53 39.0 3.36e-01 81.7% 70.0%
3284889 243.1.1.76 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF25976 0.51 40.0 3.36e-01 91.7% 82.5%
3718163 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.51 38.0 2.92e-01 81.7% 33.3%
5045468 325.1.6.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif 0.51 38.0 2.92e-01 86.7% 51.8%