←Back to structures
rifoxyb1_full_scaffold_4_prodigal-single.1__X__X__00129
Bact-Virrifoxyb1_full_scaffold_4_prodigal-single.1__X__X__00129
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 24-67
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6d92A01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.63 | 51.0 | 3.29e-01 | 100.0% | 22.1% |
| 3dlbA04 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.62 | 51.0 | 3.50e-01 | 100.0% | 29.1% |
| 3ephA03 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.58 | 43.0 | 4.06e-01 | 86.4% | 66.7% |
| 4e72A02 | 3.90.640.20 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › Heat-shock cognate protein, ATPase | 0.57 | 42.0 | 3.36e-01 | 81.8% | 40.4% |
| 4k17B01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 38.0 | 3.05e-01 | 100.0% | 29.7% |
| 3lohE05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 46.0 | 3.44e-01 | 100.0% | 91.3% |
| 5utkA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 46.0 | 3.86e-01 | 100.0% | 90.4% |
| 1mkeA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 44.0 | 3.27e-01 | 100.0% | 38.2% |
| 5fmvA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 45.0 | 3.81e-01 | 100.0% | 89.3% |
| 2l9wA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.55 | 41.0 | 3.25e-01 | 88.6% | 81.5% |
| 2d9wA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 43.0 | 3.43e-01 | 100.0% | 40.0% |
| 6s2wA01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.54 | 37.0 | 3.28e-01 | 79.5% | 42.7% |
| 1we6A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.54 | 40.0 | 3.23e-01 | 93.2% | 38.7% |
| 1g6zA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.54 | 40.0 | 3.58e-01 | 88.6% | 55.7% |
| 2egtA01 | 6.20.50.50 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.52 | 33.0 | 3.37e-01 | 70.5% | 85.2% |
| 4ad9A01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.52 | 40.0 | 2.78e-01 | 100.0% | 41.2% |
| 2v5gA00 | 3.40.1690.10 | Alpha Beta › 3-Layer(aba) Sandwich › name from scop › secretion proteins EscU | 0.52 | 42.0 | 3.21e-01 | 97.7% | 36.7% |
| 3bgvD00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 38.0 | 2.35e-01 | 84.1% | 11.9% |
| 2ed8A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 42.0 | 3.49e-01 | 100.0% | 77.9% |
| 1vsaa00 | 4.10.410.60 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › | 0.50 | 33.0 | 3.12e-01 | 70.5% | 66.7% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3320717 | 3433.1.1.3 ↗ | a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Plasmid-encoded ParB dimerization domain › BRX | 0.69 | 45.0 | 4.22e-01 | 72.7% | 55.6% |
| 3335040 | 5.1.3.129 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BRX | 0.68 | 45.0 | 4.19e-01 | 72.7% | 54.5% |
| 3376285 | 706.1.1.4 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › BRX | 0.66 | 45.0 | 4.21e-01 | 75.0% | 58.5% |
| 4486835 | 2484.1.1.37 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase | 0.62 | 50.0 | 3.83e-01 | 100.0% | 37.5% |
| 3936161 | 633.23.1.5 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › Clc-like | 0.62 | 45.0 | 2.92e-01 | 81.8% | 23.7% |
| 2673846 | 3167.1.1.1 ↗ | a+b two layers › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) › Ribosomal_S21e | 0.60 | 45.0 | 3.85e-01 | 88.6% | 57.8% |
| 5078629 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.59 | 45.0 | 3.48e-01 | 88.6% | 65.1% |
| 340177 | 4104.1.1.1 ↗ | beta sandwiches › EscU C-terminal domain-like › EscU C-terminal domain-like › EscU C-terminal domain-like › Bac_export_2 | 0.57 | 43.0 | 3.52e-01 | 88.6% | 43.6% |
| 3853070 | 391.1.1.17 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › VWC2L_C | 0.56 | 38.0 | 3.82e-01 | 72.7% | 71.1% |
| 3385549 | 2004.1.1.156 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 | 0.56 | 33.0 | 2.19e-01 | 100.0% | 13.3% |
| 3634274 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.55 | 41.0 | 3.26e-01 | 90.9% | 65.5% |
| 3680490 | 216.1.1.1 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con | 0.54 | 38.0 | 2.80e-01 | 77.3% | 30.4% |
| 3853169 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.54 | 43.0 | 2.68e-01 | 100.0% | 29.6% |
| 3991790 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 43.0 | 3.40e-01 | 97.7% | 52.4% |
| 3604402 | 101.1.2.554 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF30184 | 0.53 | 31.0 | 2.49e-01 | 97.7% | 23.2% |
| None | — | 0.53 | 44.0 | 2.74e-01 | 100.0% | 28.1% | |
| 3381618 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 41.0 | 3.04e-01 | 88.6% | 33.6% |
| None | — | 0.53 | 43.0 | 2.92e-01 | 100.0% | 41.0% | |
| 3996623 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 42.0 | 3.52e-01 | 100.0% | 57.8% |
| 3187813 | 220.1.1.204 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_24 | 0.53 | 42.0 | 3.29e-01 | 100.0% | 41.7% |
| 5019729 | 3769.1.1.0 ↗ | 0.52 | 37.0 | 3.69e-01 | 79.5% | 100.0% | |
| 351874 | 4104.1.1.1 ↗ | beta sandwiches › EscU C-terminal domain-like › EscU C-terminal domain-like › EscU C-terminal domain-like › Bac_export_2 | 0.52 | 41.0 | 3.18e-01 | 97.7% | 36.1% |
| 3487385 | 109.21.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleopor_Nup85 | 0.51 | 41.0 | 2.38e-01 | 95.5% | 94.9% |
| 3519618 | 109.21.1.4 ↗ | alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Sec16_C,Sec16 | 0.51 | 42.0 | 2.46e-01 | 100.0% | 38.9% |
| 3999570 | 220.1.1.5 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PID | 0.51 | 39.0 | 3.06e-01 | 88.6% | 42.9% |
| 1266295 | 247.1.1.0 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase | 0.50 | 40.0 | 2.59e-01 | 100.0% | 29.1% |
| 4025332 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.50 | 34.0 | 2.07e-01 | 75.0% | 9.5% |
| 4961820 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.50 | 35.0 | 3.31e-01 | 79.5% | 60.0% |
| 3733732 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 38.0 | 2.41e-01 | 86.4% | 47.5% |